Stars
Multi-platform, free open source software for visualization and image computing.
White matter tractography clustering and more...
PyTorch implementation of FastSurferCNN
FastSurfer Lesion Inpainting Tool (FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other a…
A workflow to allow Freesurfer recon-all to run on brain image with gliomas
Estimate structural disconnection from voxel-based lesion maps.
Normalising T1 weighted brain scans and lesions.
GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractog…
VertexWiseR R package : a suite of tools to extract, manipulate, analyze, and visualize cortical surface and hippocampal vertex-wise data
This is a mirror. Feel free to use the issue tracker. PRs welcome.
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Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
An extended Human Connectome Project multimodal parcellation atlas of the human cortex and subcortical areas
Novel modification to ComBat by Johson, Rabinovic, and Li (Biostatistics, 2007) to shift data to mean and variance of subset of samples rather than grand mean and pooled variance (http://www.biomed…
Tools for analyzing and quantifying effects of confounder variables on machine learning model predictions.
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Standard human cortical surface-based template for neuroimaging analyses (Freesurfer, left-right-symmetric, ~32k vertices) v
A platform for community discussion. Free, open, simple.
Review of available CPUs for brain imaging research