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logghostbuster Public
LogGhostbuster: A hybrid Isolation Forest, and Transformer-based system for detecting bot behavior in log data.
Python MIT License UpdatedJan 10, 2026 -
quantms Public
Forked from bigbio/quantmsQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
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blood-review-data Public
Forked from asierlarrea/blood-review-dataBlood proteomics Analysis using Public proteomics data
R Other UpdatedDec 8, 2025 -
xlmod-CV Public
Forked from HUPO-PSI/xlmod-CVRepo for the XLMOD ontology for chemical cross linkers
Python Apache License 2.0 UpdatedNov 7, 2025 -
quantms-ms2rescore-paper Public
Forked from bigbio/quantms-rescoring-paper -
sdrf-pipelines Public
Forked from bigbio/sdrf-pipelinesDifferent python tools to validate and convert SDRF files
Python Apache License 2.0 UpdatedSep 6, 2025 -
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proteomics-metadata-standard Public
Forked from bigbio/proteomics-sample-metadataThe Proteomics Experimental Design file format: Standard for experimental design annotation
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OpenMS Public
Forked from OpenMS/OpenMSThe codebase of the OpenMS project
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os-proteomics Public
View point in Open source in Proteomics
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smol-course Public
Forked from huggingface/smol-courseA course on aligning smol models.
Jupyter Notebook Apache License 2.0 UpdatedDec 3, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedDec 3, 2024 -
psi-ms-CV Public
Forked from HUPO-PSI/psi-ms-CVHUPO-PSI mass spectrometry CV
Python Other UpdatedNov 10, 2024 -
ThermoRawFileParser Public
Forked from CompOmics/ThermoRawFileParserThermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
C# Apache License 2.0 UpdatedOct 13, 2024 -
ontollm Public
A simple tool fo search free-text on OBO ontologies using LLMs (research tool)
Python UpdatedOct 10, 2024 -
CompProt2019-paper Public
This repository store the content of a Computational Proteomics manuscript Trends and Opportunities by 2019
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FDRBench Public
Forked from Noble-Lab/FDRBenchEstimation of false discovery proportion for mass spectrometry proteomics data using entrapment
Java Apache License 2.0 UpdatedJun 18, 2024 -
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mimic Public
Forked from percolator/mimicA decoy database scrambler that conserves homology
C++ Apache License 2.0 UpdatedNov 1, 2023 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 11, 2023 -
MSnet Public
Forked from PHOENIXcenter/MSnetA large open benchmark dataset for computational proteomics
GNU General Public License v3.0 UpdatedJun 21, 2023 -
sdrfcheck-api Public
A flask API for the SDRF annotator tool
Python Apache License 2.0 UpdatedMay 22, 2023 -
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chat-langchain Public
Forked from langchain-ai/chat-langchainPython MIT License UpdatedMay 3, 2023 -
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containers-fork Public
Forked from BioContainers/containersBioinformatics containers
Dockerfile Apache License 2.0 UpdatedNov 21, 2022 -
pride-molecule-indexer Public
Forked from PRIDE-Archive/pride-molecule-indexerNextFlow and NF-Core workflow that convert PRIDE Complete submissions to json files including PSMs, Peptides and Proteins.
Java Apache License 2.0 UpdatedNov 4, 2022 -
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