These scripts can be adapted to different number and type of genomic datasets. In this case, only 1 control and 1 treatment tracks are being visualised. More tracks can be added based on user preference by simple adaptation of the code. Visualisation plots can be downloaded in .png format.

Start here:

git clone https://github.com/ys-lim/gviz_shiny.git

Datasets used for visualisation are from:

Kae-Jiun Chang, Ira Agrawal, Anna Vainshtein, Wan Yun Ho, Wendy Xin, Greg Tucker-Kellogg, Keiichiro Susuki, Elior Peles, Shuo-Chien Ling, Jonah R Chan (2021) TDP-43 maximizes nerve conduction velocity by repressing a cryptic exon for paranodal junction assembly in Schwann cells eLife 10:e64456

Scripts adapted from Monash Bioinformatics Platform.