Correct pytest.raises matches to match (#15346)

Fixups for jupyter (#15136)

* Fixups for jupyter

This PR fixes a few things for some jupyter related packages.

py-ipython:
- make the python depends_on statements reflect needs of different
  versions
- remove an unneeded conflicts directive

py-ipywidgets:
- add new version
- set version constraints for py-widgetsnbextension

py-jupyter-console
- add new version
- set python dependencies for versions as needed
- set version constraint for py-ipython
- set version constraints for py-prompt-toolkit

py-pyqt5
- build with py-sip

py-qtconsole
- add dependency on py-pyqt5

* Update var/spack/repos/builtin/packages/py-jupyter-console/package.py

Tweak version ranges.

Co-Authored-By: Adam J. Stewart <[email protected]>

* Update var/spack/repos/builtin/packages/py-jupyter-console/package.py

Tweak version range.

Co-Authored-By: Adam J. Stewart <[email protected]>

* Make py-pyqt5 a run dependency

Also, make formatting more consistent.

* Fix site_packages_dir

Change reference of site_packages_dir to self.site_packages_dir. Oddly,
this did not show up as a problem until I regenerated the module.

* Restore py-pyqt5 to previous state

* Explicitly set path to site_packages_dir

This change prevents an error when regenerating the py-pyqt5 module
file.

* Fix flake8 errors

* Make sure prefix is in join_path

* Fix flake8 errors

Co-authored-by: Adam J. Stewart <[email protected]>

Hydrogen: update dependency on aluminum (#14760)

* Hydrogen now depends on `aluminum +nccl` vs. `aluminum +mpi_cuda`
* Hydrogen: Simplify Mac OS OpenMP-detection logic
* Aluminum: Add Mac OS OpenMP-detection logic
* LBANN: depend on [email protected]: instead of conduit@master

Specify the scope of pragma pack

`mirror_archive_path` was failing to account for the case where the fetched version isn't known to Spack.

- [x] don't require the fetched version to be in `Package.versions`
- [x] add regression test for mirror paths when package does not have a version

fgsl: new version + fix for recent spack commit (#12790)

This PR has several modifications for the r package.

- The tk package is always depended on but this pulls in X11, making the
  'X' variant non-functional. This PR sets a dependency of tk on '+X'.
- There is a missing dependency on libxmu when '+X' is set.
- The libraries for R wind up in a non-standard location and are thus
  left out of the RPATH settings. This PR adds that directory to RPATH.
- The MKL integer interface for gfortran is not in the BLAS libs. This
  PR replaces the intel interface with the gfortran interface if needed.
- Use the `LibraryList` `ld_flags` method for blas as that is more in
  line with th R Installation and Administration manual.

Note that this PR depends on PR #11956. This PR closes #8642.

py-deeptools: adding release 3.2.1 sha256 sum (#11174)

* initial work to make use of an 'upstream' spack installation: this uses the DB of the upstream installation to check if a package is installed

* need to query upstream dbs when adding new record to local db

* prevent reindexing upstream DBs

* set prefix on specs read from DB based on path stored in install record

* check that Spack does not install packages that are recorded as installed in an upstream db

* externals do not add their path to install records - need to use 'external_path' to get path of upstream externals

* views need to check for upstream installations when linking metadata

* package and spec now calculate upstream installation properties on-demand themselves rather than depending on concretization to set these properties up-front. The added tests for upstream installations don't work with this new strategy so they need to be updated

* only refresh modules for local specs (not those in upstream packages); optionally generate local module files for packages installed upstream

* when a user tries to locate a module file for a package installed upstream, tell them to use the upstream spack instance to locate it

* support recursive upstream databases (allow upstream databases to use their own upstream databases)

* separate upstream config into separate file with its own schema; each entry now also includes a name

* metadata_dir is no longer customizable on a per-instance basis for YamlDirectoryLayout

* treat metadata_dir as an instance variable but dont set it from kwargs; this follows several other hardcoded variables which must be consistent between upstream and downstream DBs. Also update DirectoryLayout.metadata_path to work entirely with Spec.prefix, since Spec.prefix is set from the DB when available (so metadata_path was duplicating that logic)