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› Search #bioinformatics #bam #bio #noodles #genomics #pileup #htsget #amazon-s3

  1. rust-htslib

    HTSlib bindings and a high level Rust API for reading and writing BAM files

    v0.51.0 5.6K #bam #bioinformatics #pileup #sequencing

  2. perbase

    Fast and correct perbase BAM/CRAM analysis

    v1.2.0 #genomics #bioinformatics #depth #coverage

  3. noodles

    Bioinformatics I/O libraries

    v0.104.0 7.1K #bioinformatics #bam #sam #bio

  4. htsget-config

    Used to configure htsget-rs by using a config file or reading environment variables

    v0.20.1 #htsget #amazon-s3 #config-file #htsget-rs #location #server-authorization #bioinformatics #ticket #env-vars #storage-service

  5. rust-bio-tools

    A set of fast and robust command line utilities for bioinformatics tasks based on Rust-Bio

    v0.42.2 4.1K #bioinformatics #genomics #bam #fastq #rust-bio #fuzzy-matching #csv #html-reports #bcf #plot

  6. htsget-search

    The primary mechanism by which htsget-rs interacts with, and processes bioinformatics files. It does this by using noodles to query files and their indices.

    v0.12.5 #htsget #bioinformatics #noodles #byte-range #htsget-rs #amazon-s3 #file-processing #bgzf #format-file

  7. biometal

    ARM-native bioinformatics library with streaming architecture and evidence-based optimization

    v1.10.0 #genomics #bioinformatics #neon #arm

  8. noodles-csi

    Coordinate-sorted index (CSI) format reader and writer

    v0.53.0 12K #bioinformatics #noodles #csi #bio

  9. oxbow

    Read conventional genomic file formats as data frames and more via Apache Arrow

    v0.5.1 #genomics #bioinformatics #dataframe #ngs #arrow

  10. noodles-bcf

    Binary Call Format (BCF) reader and writer

    v0.81.0 950 #bioinformatics #binary-call-format #noodles #bio

  11. convert_genome

    Convert DTC, VCF, or BCF genome files to VCF, BCF, or PLINK 1.9

    v0.1.2 #vcf #genome #convert #bcf #reference #panel #infer #plink #chromosome #zip

  12. tidyvcf

    command-line tool to convert VCF files to tab/comma separated tables

    v0.7.3 950 #csv #column #comma-separated #convert #dataframe #data-analysis #gz #vep #field-name #variant-calling

  13. htsgetr

    htsget protocol server implementation in Rust

    v0.1.6 #htsget #genomics #jwt #bam #fasta #bearer-token #local-storage #cram #jwk #authentication

  14. bcf_reader

    a small, lightweight, pure-Rust library to allow efficient, cross-platform access to genotype data in BCF files

    v0.3.1 700 #cross-platform #bcf #genotype #data-access #record #file-reader

  15. noodles-util

    noodles support utilities

    v0.73.0 100 #bioinformatics #bam #noodles #bio

  16. hts-sys

    HTSlib bindings

    v2.2.0 5.9K #bam #bioinformatics #htslib #sequencing #pileup

  17. noodles-bed

    BED (Browser Extensible Data) reader and writer

    v0.30.0 900 #bioinformatics #noodles #bed #bio

  18. pitch

    Quickly and accurately determine the pitch and volume of a sound sample

    v0.2.0 260 #bcf #detect #bacf #acf #auto-correlation

  19. bb-flasher-bcf

    flash BeagleConnect Freedom

    v1.0.2 230 #flasher #beagle #beagleconnect

  20. noodles-refget

    A refget client

    v0.8.0 600 #bioinformatics #noodles #bio #api-bindings

  21. permutate

    Generic permutator that permutates singular and multiple lists

    v0.3.2 1.3K #list #permute #permutator

  22. extended-htslib

    extended HTSlib bindings and a high level Rust API for reading and writing BAM files

    v0.2.0 #bam #htslib #bioinformatics #pileup #sequencing

  23. exon-bcf

    Exon BCF

    v0.32.4 #exon #bcf #bioinformatics #proteomics #arrow #sql #query-engine #data-fusion

  24. noodles-core

    Shared utilities when working with noodles

    v0.18.0 13K #bioinformatics #bio

  25. vcfexpress

    filtering VCF files using Lua expressions

    v0.3.3 #vcf #expression #template #lua #filtering #bcf

  26. rustynuc

    Quick analysis of pileups for likely 8-oxoG locations

    v0.3.0 #bioinformatics #8-oxo-g #pileup #oxo-g #bio

  27. nu_plugin_bio

    Parse and manipulate common bioinformatic formats in nushell

    v0.85.0 #bioinformatics #nu-shell #format #fasta #structured-data #parse-and-manipulate

  28. ppgg

    associated executable, the library provides tools for building tools that can parse and work for VCF and FASTA files while the associated executable is a command line tool for generating…

    v0.1.4 #bioinformatics #genetics #proteomics #vcf-files

    29. Try searching with DuckDuckGo or on crates.io.

  29. exon-test

    Exon test crate

    v0.3.4-beta.9 #bioinformatics #exon #data-fusion #data-analysis #testing #proteomics #sql #biology

  30. vcfkit

    program for vcf/bcf file manipulation

    v0.1.1 #vcf #snp #bio #hts

  31. maelstrom-core

    Tools for processing of NGS data

    v0.1.1 #data-processing #ngs #part