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ZOOTAXA ISSN 1175-5326 (Print Edition) & ISSN 1175-5334 (Online Edition)
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Most highly cited papers* (according to SCIE) 

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Checklist of catfishes, recent and fossil (Osteichthyes: Siluriformes), and catalogue of siluriform primary types  
CARL J. FERRARIS, JR.
(USA)
Zootaxa 1418: 1-628 (8 Mar. 2007
Abstract & excerpt
(PDF; 20KB) | Full article Part 1  & 2 (PDF; 4890KB) 
open access 
Times Cited in SCIE: 2
61 

New World direct-developing frogs (Anura: Terrarana): Molecular phylogeny, classification, biogeography, and conservation
S. BLAIR HEDGES, WILLIAM E. DUELLMAN, & MATTHEW P. HEINICKE (USA)
Zo
otaxa 1737: 1-182 (31 Mar. 2008
Abstract & excerpt (PDF; 20KB) | Full article (PDF; 6590KB)  Order PDF
Times cited in SCIE: 163

A revised catalog of the mite family Phytoseiidae
G.J. DE MORAES (Brazil) , J.A. MCMURTRY (USA), H.A. DENMARK (USA) & C.B. CAMPOS (Brazil)
Zootaxa 434: 1-494 (18 February 2004) 1282 references      
Abstract & excerpt
(PDF; 50KB) free | Full article (PDF; 2600KB) Order PDF
Times Cited in SCIE: 156 

A checklist of the current valid species of the subfamily Triatominae Jeannel, 1919 (Hemiptera, Reduviidae) and their geographical distribution, with nomenclatural and taxonomic notes
C. GALV�O, R. CARCAVALLO, D. DA S. ROCHA & J. JURBERG (Brazil)
Zootaxa 202: 1-36 (2003) 
Abstract & excerpt
(PDF; 10KB) | Full article (PDF; 200KB) Order PDF
Times Cited in SCIE: 143

The morphology, higher-level phylogeny and classification of the Empidoidea (Diptera)
B.J. SINCLAIR (Germany) & J.M. CUMMING (Canada)
Zootaxa 1180: 1-172 (21 Apr. 2006) 69 plates; 250 references 
Abstract & excerpt (PDF; 10KB) | Full article part A, part B (PDF; 3900KB) 
open access 
Times Cited in SCIE: 83

Annotated checklist of the rotifers (Phylum Rotifera), with notes on nomenclature, taxonomy and distribution
HENDRIK SEGERS
(Belgium)
Zo
otaxa
1564: 1-104 (31 Aug. 2007
Abstract & excerpt (PDF; 20KB) free | Full article (PDF; 670KB)   open access 
Times cited in SCIE: 76

Zootaxa 1430: 1-86 (22 Mar. 2007) 26 plates; 168 references                           Accepted: 27 Feb. 2007
Systematics of the Palaearctic and Oriental lizard tribe Lacertini (Squamata: Lacertidae: Lacertinae), with descriptions of eight new genera
E. NICHOLAS ARNOLD (UK), OSCAR ARRIBAS (Spain) & SALVADOR CARRANZA (Spain)
Abstract & excerpt (PDF; 20KB) free | Full article (PDF; 1500KB) subscription required
Times cited in SCIE: 75

Lepidoptera phylogeny and systematics: the state of inventorying moth and butterfly diversity
Niels P.Kristensen (Denmark), Malcolm J. Scoble (UK) & Ole Karsholt (Denmark)
Zootaxa 1668: 699-747 (21 Dec. 2007) 9 plates; 163 references                       Accepted: 21 Nov. 2007
Abstract & excerpt (PDF; 20KB) free | Full article (PDF; 1110KB)   open access 
Times cited in SCIE: 75

Order Trichoptera Kirby 1813 (Insecta), Caddisflies
Ralph W. Holzenthal, Roger J. Blahnik, Aysha L. Prather & Karl M. Kjer (USA)
Zootaxa 1668: 639-698 (21 Dec. 2007) 1 plate;  89 references                          Accepted: 16 Nov. 2007
Abstract & excerpt (PDF; 20KB) free | Full article (PDF; 2470KB)   open access 
Times Cited in SCIE: 69

Venation pattern and revision of Orthoptera sensu nov. and sister groups. Phylogeny of Palaeozoic and Mesozoic Orthoptera sensu nov.
O. B�THOUX & A. NEL (France)
Zootaxa 96: 1-88 (2002) 
Abstract & excerpt
(PDF; 10KB) | Full article (PDF; 1600KB)  Order PDF
Times Cited in SCIE:
64

* Listed here are only top 10 most-cited Zootaxa papers in SCIE (Science Citation Index Expanded)
See also most highly cited papers in Zootaxa according to Google Scholar

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Published  on 10 Aug 2013