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Bio-Informatics Software

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Browse free open source Bio-Informatics software and projects below. Use the toggles on the left to filter open source Bio-Informatics software by OS, license, language, programming language, and project status.

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  • 1
    CARE2X - Integrated Hospital Info System
    Integrated Hospital Information System. PHP,mySQL,PostgreSQL. Surgery, Nursing,Outpatient,Wards,Labs, Pharmacy, Security,Admission,Schedulers, Repair, Communication & more. Multilanguage, WYSIWYG forms, userconfig, embedded workbots. Modular & scalab
    Downloads: 12 This Week
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  • 2

    OpenEEG - EEG hardware and software

    The OpenEEG project is about creating a low cost EEG device

    Working hardware has been built and is in a late beta stage. Software is also available.
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    Downloads: 11 This Week
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  • 3
    Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
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    Downloads: 27 This Week
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  • 4
    JChemPaint Applet and Swing Application
    The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
    Downloads: 6 This Week
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  • Performance Monitoring Solution for DevOps and IT Operations. Icon
    Performance Monitoring Solution for DevOps and IT Operations.

    Site24x7 offers unified cloud monitoring for DevOps and IT operations within small to large organizations.

    The solution monitors the experience of real users accessing websites and applications from desktop and mobile devices. In-depth monitoring capabilities enable DevOps teams to monitor and troubleshoot applications, servers and network infrastructure, including private and public clouds. End-user experience monitoring is done from more than 100 locations across the world and various wireless carriers.
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  • 5
    A neuroscientific knowledge management system for the published literature
    Downloads: 10 This Week
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  • 6
    BioEra is DSP visual designer that can be used to create interfaces between human being and a machine with using bio signals like EEG, QEEG, HEG, EMG, ECG, GSR, EOG, visual/sound entrainment and others.
    Downloads: 3 This Week
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  • 7
    Terminology for Description of Dynamics
    The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.
    Downloads: 1 This Week
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  • 8
    BioPro project has been moved to http://www.bioera.net/
    Downloads: 1 This Week
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  • 9
    Zodiac is a Molecular Modelling suite for drug design. Its features include support for haptic devices and nintendo wiimote fully undoable command list, MMFF94 implementation, POVRAY output.
    Downloads: 1 This Week
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  • 10
    4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The framework may incorporate any reaction and diffusion algorithms applicable in a 4D grid layout.
    Downloads: 0 This Week
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  • 11
    BioSap-Blast Integrated Oligonucleotide Selection Accelerator Package. BioSap selects unique oligos for microarrays by detecting user-defined parameters and running parallel instances of Featurama and Blast on compute engines, producing xml output files.
    Downloads: 0 This Week
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  • 12
    Bioleiro is a Bioloid-based quadruped robot controlled by a PC.
    Downloads: 0 This Week
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  • 13
    Coffee and linux; Keywords: coffee, tea, chocolate, linux, UNIX, interface
    Downloads: 0 This Week
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  • 14
    EASER

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.
    Downloads: 0 This Week
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  • 15
    Fingerprint-POC Fingerprint Matching using Phase-Only Correlation method. Biometrics application use with linux.
    Downloads: 0 This Week
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  • 16
    HmmSDK is a hidden Markov model (HMM) software development kit written in Java. It consists of core library of HMM functions (Forward-backward, Viterbi, and Baum-Welch algorithms) and toolkits for application development.
    Downloads: 0 This Week
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  • 17
    IMPACT

    IMPACT

    Integrated Multiprogram Platform for Analyses in ConTest

    Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community. Maldonado E, Dutheil JY, da Fonseca RR, Vasconcelos V, Antunes A (2011) IMPACT: Integrated Multiprogram Platform for Analyses in ConTest. Journal of Heredity, 102 (3): 366-369. doi: https://doi.org/10.1093/jhered/esr003
    Downloads: 0 This Week
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  • 18
    IMPACT_S

    IMPACT_S

    Integrated Multiprogram Platform Analyze & Combine Tests of Selection

    Maldonado E, Sunagar K, Almeida D, Vasconcelos V, Antunes A (2014) IMPACT_S: Integrated Multiprogram Platform to Analyze and Combine Tests of Selection. PLoS ONE 9(10): e96243. doi: https://doi.org/10.1371/journal.pone.0096243
    Downloads: 0 This Week
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  • 19
    LMAP

    LMAP

    Lightweight Multigene Analyses in PAML

    Maldonado E, Almeida D, Escalona T, Khan I, Vasconcelos V and Antunes A (2016) LMAP: Lightweight Multigene Analyses in PAML. BMC Bioinformatics, 17:354. doi: https://doi.org/10.1186/s12859-016-1204-5
    Downloads: 0 This Week
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  • 20
    LMAP_S

    LMAP_S

    Lightweight Multigene Alignment and Phylogeny eStimation

    Emanuel Maldonado and Agostinho Antunes (2019) LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation. BMC Bioinformatics, 20:739. doi: https://doi.org/10.1186/s12859-019-3292-5
    Downloads: 0 This Week
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  • 21
    Mars Eva Computing Environment is a JMF, JINI project that is used to provide a collaborative mission planning & execution environment for furture teams on Mars. This effort is part of a simulation for the Mars Society of Australia.
    Downloads: 0 This Week
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  • 22
    This project will develop cross-platform Java software for interfacing with EEG devices, specifically hardware developed by the OpenEEG project (http://openeeg.sourceforge.net/).
    Downloads: 0 This Week
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  • 23
    Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
    Downloads: 0 This Week
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  • 24
    The intention of this project is to create a structure for future, larger neural net designs, to create a symmetric multi-processing neural network, capable of sustaining a large amount of simulated neurons. Note: this description does not necessarily s
    Downloads: 0 This Week
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  • 25

    SciBearSpace

    Clinical Information Management

    Open Source Clinical Information Management System. From research to laboratory. Gathering / storing of analytical data within an SQL database.
    Downloads: 0 This Week
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