Search Results for "deconvolution"
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Showing 35 open source projects for "deconvolution"
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NODE_deconvolution
A Python program for deconvolution spatial transcriptomics data and in
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BioXTAS RAW
Processing and analysis of Small Angle X-ray Scattering (SAXS) data.
BioXTAS RAW is a program for analysis of Small-Angle X-ray Scattering (SAXS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis... -
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Image16
Image viewer/editor specialized in astrophotography 16bits processing
... (bilateral, threshold and chroma/luma). Unsharp Masking, Laplacian. Masked Undo. Curve Undo, LCE. CLAHE. SCNR. Wavelets decomposing and denoising. Lucy-Richardson and Wiener deconvolution. FFT contrasting/denoising. Uses Astrometry.net to platesolve images. Includes Bright Star Catalogue up to mag. 5 and Tycho 2 Catalogue up to mag. 12 allowing for Star B-V color data for color balancing plate solved images. Interfaces with ASCOM, G'MIC and Starnet++. Macros. EAA. Win>=7 and Linux+Wine>=7. -
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Eventer
Rapid, unbiased, reproducible analysis of synaptic events
Eventer is a programme designed for the detection of spontaneous synaptic events measured by electrophysiology or imaging. The software combines deconvolution for detection, and variable length template matching approaches for screening out false positive events. Eventer also includes a machine learning-based approach allowing users to train a model to implement their ‘expert’ selection criteria across data sets without bias. Sharing models allows users to implement consistent analysis... -
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WSClean
WSClean is a fast widefield interferometric imager
WSClean (w-stacking clean) is a fast generic widefield imager. It uses the w-stacking algorithm and can make use of the w-snapshot algorithm. As of Feb 2014, it is 2-12 times faster than CASA's w-projection, depending on the array configuration. It supports full-sky imaging and proper beam correction for homogeneous dipole arrays such as the MWA. WSClean allows Hogbom and Cotton-Schwab cleaning and has wideband, multiscale, compressed sensing and joined-polarization deconvolution modes. All... -
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SEM3De
ImageJ plugin to enhance stack of images acquired by SEM
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ANDTool
Analysis Nuclei DAB (AND) Tool
Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing... -
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DEBay
Deconvolutes qPCR data to estimate cell-type-specific gene expression
DEBay: Deconvolution of Ensemble through Bayes-approach DEBay estimates cell type-specific gene expression by deconvolution of quantitative PCR data of a mixed population. It will be useful in experiments where the segregation of different cell types in a sample is arduous, but the proportion of different cell types in the sample can be measured. DEBay uses the population distribution data and the qPCR data to calculate the relative expression of the target gene in different cell types... -
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De_Lux
Deconvolution of luminescence cross-talk in microplate reader data
An algorithm to deconvolve the luminescence cross-talk in high-throughput gene expression profiling to recover the true luminescence activity of a microplate. -
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BlockSparse
Efficient GPU kernels for block-sparse matrix multiplication
The blocksparse repository provides efficient GPU kernels (TensorFlow custom ops) for block-sparse matrix multiplication and convolution operations. The idea is to exploit block-level sparsity — i.e. treat matrices or weight tensors as composed of blocks, many of which may be zero or unused — to save compute and memory when sparsity patterns are structured. This is particularly useful in models like Sparse Transformers, where attention matrices or intermediate layers may adopt block-sparse... -
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MAT-MECAS
Cell impedance analysis software.
MAT-MECAS is used for calculation of impedance parameters of a cell from recorded current responses elicited by bipolar voltage stimuli in a whole-cell patch-clamp experiment. The calculations are based on a FFT deconvolution procedure and on approximation of the reconstructed currents with a theoretical function. The impulse response of the signal path is necessary for the calculations. Read manual first! For testing MAT-MECAS we provide a sample data along with sample stimulation... -
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An open-source implementation of our network-based target deconvolution approach, named target addiction score (TAS). License: The TAS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY...
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deconvolv
deconvolv: convolution and deconvolution of WAV files
deconvolv: convolution and deconvolution of WAV files Supported signal processing functions: correlation, convolution, de-convolution, convolution with Hilbert transformation, de-convolution with Hilbert transformation Copyright (c) 2008-2016 by Klaus Michael Indlekofer. All rights reserved. Note: Special restrictions apply. See disclaimers below and within the distribution. (We are not affiliated in any way with companies/persons mentioned above. All brand names and trademarks... -
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libsombrero
Astronomical object/structure detection from 1D and 2D data sets.
Sombrero is a fast wavelet image processing and object detection C library for astronomical images. Sombrero is named after the "Mexican Hat" shape of the wavelet masks used in image convolution and is released under the GNU LGPL library. -
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Matlab software for analysis of skin conductance data (SC; viz., electrodermal activity, EDA; galvanic skin response, GSR). Data decomposition and scientific analysis based on deconvolution approach. Various functions via GUI or batch-mode.
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ThermV
Comprehensive thermal analysis software package
ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. The project... -
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TranKin
TranKin is a software for solving 1-D deconvolution problems.
TranKin has been primarily developed for enhancement of time-resolution in transient kinetic applications; however, it is capable of handling almost every 1-D deconvolution problem. -
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Multiview Lightsheet Data Reconstruction
Software for the reconstruction of multiview microscopic acquisitions
Lightsheet Microscopy (LSFM, SPIM) allows in toto imaging of large specimens by acquiring image stacks from multiple angles. To realize its full potential the data needs to be reconstructed. This software allows registration of multiview data, sample drift correction, multichannel alignment, sample-induced aberration correcting using external markers or sample inherent features. The registered data can be interactively viewed (using the BigDataViewer by Tobias Pietzsch), resaved, fused,... -
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BRACIL
ChIP-seq analysis tool
Binding Resolution Amplifier and Cooperative Interaction Locator (BRACIL) is a blind-deconvolution model that integrates ChIP-seq coverage with motif discovery. BRACIL predicts binding site locations with high-resolution and also cooperative interactions in ChIP-seq data. -
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Multi-GPU deconvolution
Multi-GPU implementation of non-blind deconvolution of a 3-D image
The program performs one of the three non-blind deconvolution methods (Wiener, EM-MLE, ICTM) on a 3-D image. The deconvolution can run either on CPU or on one or multiple GPUs (up to 4 units supported). The program is running in a console. Help can be viewed by running the program without parameters. -
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Parallel HRRT Deconvolution is a multithreaded ImageJ plugin for motion correction of PET brain images.
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DeconvDemo
An image deconvolution / deblur software
DeconvDemo is a Qt & opencv based image deconvolution/ deblur software which is including the spatial and frequency domain solver. image deconvolution / deblur software with non-blind deconvolution algorithm New: Add pregressive non-blined deconvolution Add blind kernel estimation Implemented mehtod: METHOD_WIENER, METHOD_TIKHONOV, METHOD_LUCY_RICHARDSON, METHOD_CONJUGATE_GRADIENT, METHOD_SPARSE_PRIOR, METHOD_GAUSSIAN_PRIOR... -
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Arpeggio
Harmonic analysis of ChIP-seq experiments
... of cells, conditions and organisms. Importantly, these interaction patterns broadly reflect the biological properties of the binding events. To generate these profiles, termed Arpeggio profiles, we applied harmonic deconvolution techniques to the autocorrelation profiles of the ChIP-seq signals. A detailed tutorial is available in the Wiki page (http://sourceforge.net/p/arpeggio/wiki/Home/)