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1. Pseudotime-downstream-by-ML Pseudotime-downstream-by-ML Public

   This script utilizes Monocle3 for inferring pseudotime and employs gradient boosting machine learning (xgboost) to identify genes predictive of pseudotime. Subsequently, it fits a regression model …

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2. FOUNDIN-PD FOUNDIN-PD Public

   Multiomics analysis for FOUNDIN-PD project

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3. scMoMsQC scMoMsQC Public

   Forked from Rachmanichou/scMoMsQC

   A Python pipeline for quality control analysis and outlier detection in multisample single-cell multiomics and RNAseq.

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4. Spatial-multiomics-PDAC Spatial-multiomics-PDAC Public

   multiomics including spatial trx for niche discovery in PDAC

   Jupyter Notebook 1

5. GWAS-scATACseq-Integrative-Analysis GWAS-scATACseq-Integrative-Analysis Public

   Prioritizing Non-Coding GWAS Variants Using Differential Single-Cell Chromatin Accessibility Between Disease and Control

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6. Multiomics-GRN Multiomics-GRN Public

   Gene regulatory network inference on single-cell multiomics using LDA, DORC modeling and TF-G computation

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