Uniform Manifold Approximation and Projection
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Nov 13, 2025 - Python
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umap
Here are 304 public repositories matching this topic...
JavaScript implementation of UMAP
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Jul 21, 2025 - JavaScript
An R package implementing the UMAP dimensionality reduction method.
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Nov 10, 2025 - R
Visualization for a Retrieval-Augmented Generation (RAG) Assistant 🤖❤️📚
visualization machine-learning openai umap rag huggingface streamlit large-language-models llm retrieval-augmented langchain retrieval-augmented-generation
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Oct 30, 2025 - Python
TorchDR - PyTorch Dimensionality Reduction
python data-science cuda pytorch embeddings dimensionality-reduction tsne manifold-learning umap large-scale multi-gpu optimal-transport similarity-search spectral-embedding embedding-evaluation data-vizualisation neighbor-embedding affinity-matrix
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Nov 15, 2025 - Python
Seurat meets tidyverse. The best of both worlds.
ggplot2 dplyr tidyverse pca transcripts single-cell tsne umap normalization tibble tidyr sct purrr single-cell-rna-seq seurat
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Nov 10, 2025 - R
Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised learning" (Sainburg, McInnes, Gentner, 2020).
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Feb 8, 2021 - Jupyter Notebook
Manage map and features with Leaflet and expose them for backend storage through an API.
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Feb 28, 2023 - JavaScript
Uniform Manifold Approximation and Projection (UMAP) implementation in Julia
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Oct 8, 2025 - Julia
PANDORA đź’»
data-science machine-learning data-mining bioinformatics clustering systems-biology data-visualization drug-discovery data-integration microbiome transcriptomics predictive-analytics pandora tsne umap biomarkers genomic-data-analysis clinical-data unsupervised-machine-learning
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Apr 4, 2025 - Vue
Uniform Manifold Approximation and Projection - R package
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Apr 29, 2024 - R
iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. It supports a variety of single-cell technologies, including scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq, and Spatial Transcriptomics (ST).
clustering dropout batch-normalization imputation scrna-seq diffusion-maps clustering-algorithm 3d umap normalization 10xgenomics cell-type-classification intractive-graph cite-seq singel-cell-sequencing pseudotime scvdj-seq icellr
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Nov 10, 2025 - R
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
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Feb 23, 2023 - R
A JavaScript Library for Dimensionality Reduction
clustering matrix javascript-library pca dimensionality-reduction t-sne mds unsupervised-learning lle umap isomap fastmap ltsa
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Sep 26, 2024 - JavaScript
Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)
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Aug 28, 2025 - Jupyter Notebook
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
bioinformatics big-data genomics clustering scrna-seq graph-analytics memory-efficient tsne differential-expression umap dimension-reduction single-cell-genomics single-cell-rna-seq scalable-data-analysis single-cell-atac-seq multiomics cite-seq pseudotime scatac-seq gene-modules
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Nov 7, 2025 - Python
Tera Online 32-bit and 64-bit client package(*.gpk, *.gmp, *.upk, *.umap, *.u) editor/viewer
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Jul 10, 2022 - C++
sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.
data-science machine-learning data-mining cnn netcdf hdf5 microsoft-visualbasic t-sne network-visualization manifold umap hqx graphquery
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Nov 15, 2025 - Visual Basic .NET
R package for dimensionality reduction of small datasets
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Nov 1, 2025 - R
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