LiNk-NY authored on 05/12/2024 21:47:20
| ... | ... |
@@ -15,6 +15,7 @@ importFrom(BiocBaseUtils,isScalarCharacter) |
| 15 | 15 |
importFrom(BiocGenerics,path) |
| 16 | 16 |
importFrom(BiocIO,FileForFormat) |
| 17 | 17 |
importFrom(BiocIO,import) |
| 18 |
+importFrom(S4Vectors,setValidity2) |
|
| 18 | 19 |
importFrom(SingleCellExperiment,altExps) |
| 19 | 20 |
importFrom(SingleCellExperiment,mainExpName) |
| 20 | 21 |
importFrom(SpatialExperiment,SpatialExperiment) |
LiNk-NY authored on 05/12/2024 19:43:36
| ... | ... |
@@ -10,6 +10,7 @@ importClassesFrom(TENxIO,TENxFile) |
| 10 | 10 |
importClassesFrom(TENxIO,TENxFileList) |
| 11 | 11 |
importClassesFrom(TENxIO,TENxH5) |
| 12 | 12 |
importClassesFrom(VisiumIO,TENxSpatialParquet) |
| 13 |
+importFrom(BiocBaseUtils,checkInstalled) |
|
| 13 | 14 |
importFrom(BiocBaseUtils,isScalarCharacter) |
| 14 | 15 |
importFrom(BiocGenerics,path) |
| 15 | 16 |
importFrom(BiocIO,FileForFormat) |
LiNk-NY authored on 04/10/2024 19:45:09
| ... | ... |
@@ -14,7 +14,6 @@ importFrom(BiocBaseUtils,isScalarCharacter) |
| 14 | 14 |
importFrom(BiocGenerics,path) |
| 15 | 15 |
importFrom(BiocIO,FileForFormat) |
| 16 | 16 |
importFrom(BiocIO,import) |
| 17 |
-importFrom(S4Vectors,"metadata<-") |
|
| 18 | 17 |
importFrom(SingleCellExperiment,altExps) |
| 19 | 18 |
importFrom(SingleCellExperiment,mainExpName) |
| 20 | 19 |
importFrom(SpatialExperiment,SpatialExperiment) |
LiNk-NY authored on 03/10/2024 21:16:23
| ... | ... |
@@ -9,10 +9,21 @@ import(VisiumIO) |
| 9 | 9 |
importClassesFrom(TENxIO,TENxFile) |
| 10 | 10 |
importClassesFrom(TENxIO,TENxFileList) |
| 11 | 11 |
importClassesFrom(TENxIO,TENxH5) |
| 12 |
-importFrom(BiocBaseUtils,checkInstalled) |
|
| 12 |
+importClassesFrom(VisiumIO,TENxSpatialParquet) |
|
| 13 | 13 |
importFrom(BiocBaseUtils,isScalarCharacter) |
| 14 |
+importFrom(BiocGenerics,path) |
|
| 14 | 15 |
importFrom(BiocIO,FileForFormat) |
| 16 |
+importFrom(BiocIO,import) |
|
| 17 |
+importFrom(S4Vectors,"metadata<-") |
|
| 18 |
+importFrom(SingleCellExperiment,altExps) |
|
| 19 |
+importFrom(SingleCellExperiment,mainExpName) |
|
| 20 |
+importFrom(SpatialExperiment,SpatialExperiment) |
|
| 21 |
+importFrom(SummarizedExperiment,assay) |
|
| 22 |
+importFrom(SummarizedExperiment,assays) |
|
| 23 |
+importFrom(SummarizedExperiment,colData) |
|
| 24 |
+importFrom(SummarizedExperiment,rowData) |
|
| 15 | 25 |
importFrom(TENxIO,TENxFileList) |
| 16 | 26 |
importFrom(TENxIO,TENxH5) |
| 27 |
+importFrom(methods,as) |
|
| 17 | 28 |
importFrom(methods,is) |
| 18 | 29 |
importFrom(methods,new) |
LiNk-NY authored on 03/10/2024 19:35:17
| ... | ... |
@@ -1,11 +1,17 @@ |
| 1 | 1 |
# Generated by roxygen2: do not edit by hand |
| 2 | 2 |
|
| 3 | 3 |
export(TENxXenium) |
| 4 |
+export(XeniumFile) |
|
| 4 | 5 |
exportClasses(TENxXenium) |
| 6 |
+exportClasses(XeniumFile) |
|
| 7 |
+exportMethods(import) |
|
| 5 | 8 |
import(VisiumIO) |
| 9 |
+importClassesFrom(TENxIO,TENxFile) |
|
| 6 | 10 |
importClassesFrom(TENxIO,TENxFileList) |
| 7 | 11 |
importClassesFrom(TENxIO,TENxH5) |
| 12 |
+importFrom(BiocBaseUtils,checkInstalled) |
|
| 8 | 13 |
importFrom(BiocBaseUtils,isScalarCharacter) |
| 14 |
+importFrom(BiocIO,FileForFormat) |
|
| 9 | 15 |
importFrom(TENxIO,TENxFileList) |
| 10 | 16 |
importFrom(TENxIO,TENxH5) |
| 11 | 17 |
importFrom(methods,is) |
LiNk-NY authored on 01/10/2024 21:09:50
| 1 | 1 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,12 @@ |
| 1 |
+# Generated by roxygen2: do not edit by hand |
|
| 2 |
+ |
|
| 3 |
+export(TENxXenium) |
|
| 4 |
+exportClasses(TENxXenium) |
|
| 5 |
+import(VisiumIO) |
|
| 6 |
+importClassesFrom(TENxIO,TENxFileList) |
|
| 7 |
+importClassesFrom(TENxIO,TENxH5) |
|
| 8 |
+importFrom(BiocBaseUtils,isScalarCharacter) |
|
| 9 |
+importFrom(TENxIO,TENxFileList) |
|
| 10 |
+importFrom(TENxIO,TENxH5) |
|
| 11 |
+importFrom(methods,is) |
|
| 12 |
+importFrom(methods,new) |