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  1. cfTools
  2. src
  3. RcppExports.cpp
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add random seed

RoseHuRan authored on 25/11/2023 20:01:05
Showing 1 changed files
src/RcppExports.cpp
History View file @ 9a89fee
... ... 
@@ -11,8 +11,8 @@ Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get();
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 #endif
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 // read_deconvolution_cpp
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-void read_deconvolution_cpp(std::string reads_binning_file, int num_tissues, double min_likelihood_ratio_cutoff, std::string tissue_markers_file, std::string em_algorithm_type, std::string output_file, std::string output_type, int em_max_iterations);
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-RcppExport SEXP _cfTools_read_deconvolution_cpp(SEXP reads_binning_fileSEXP, SEXP num_tissuesSEXP, SEXP min_likelihood_ratio_cutoffSEXP, SEXP tissue_markers_fileSEXP, SEXP em_algorithm_typeSEXP, SEXP output_fileSEXP, SEXP output_typeSEXP, SEXP em_max_iterationsSEXP) {
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+void read_deconvolution_cpp(std::string reads_binning_file, int num_tissues, double min_likelihood_ratio_cutoff, std::string tissue_markers_file, std::string em_algorithm_type, std::string output_file, std::string output_type, int em_max_iterations, int random_seed);
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+RcppExport SEXP _cfTools_read_deconvolution_cpp(SEXP reads_binning_fileSEXP, SEXP num_tissuesSEXP, SEXP min_likelihood_ratio_cutoffSEXP, SEXP tissue_markers_fileSEXP, SEXP em_algorithm_typeSEXP, SEXP output_fileSEXP, SEXP output_typeSEXP, SEXP em_max_iterationsSEXP, SEXP random_seedSEXP) {
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 BEGIN_RCPP
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     Rcpp::RNGScope rcpp_rngScope_gen;
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     Rcpp::traits::input_parameter< std::string >::type reads_binning_file(reads_binning_fileSEXP);
... ... 
@@ -23,13 +23,14 @@ BEGIN_RCPP
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     Rcpp::traits::input_parameter< std::string >::type output_file(output_fileSEXP);
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     Rcpp::traits::input_parameter< std::string >::type output_type(output_typeSEXP);
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     Rcpp::traits::input_parameter< int >::type em_max_iterations(em_max_iterationsSEXP);
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-    read_deconvolution_cpp(reads_binning_file, num_tissues, min_likelihood_ratio_cutoff, tissue_markers_file, em_algorithm_type, output_file, output_type, em_max_iterations);
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+    Rcpp::traits::input_parameter< int >::type random_seed(random_seedSEXP);
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+    read_deconvolution_cpp(reads_binning_file, num_tissues, min_likelihood_ratio_cutoff, tissue_markers_file, em_algorithm_type, output_file, output_type, em_max_iterations, random_seed);
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     return R_NilValue;
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 END_RCPP
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 }
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 static const R_CallMethodDef CallEntries[] = {
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-    {"_cfTools_read_deconvolution_cpp", (DL_FUNC) &_cfTools_read_deconvolution_cpp, 8},
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+    {"_cfTools_read_deconvolution_cpp", (DL_FUNC) &_cfTools_read_deconvolution_cpp, 9},
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     {NULL, NULL, 0}
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 };
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update documentation

RoseHuRan authored on 01/04/2022 04:22:10
Showing 1 changed files
src/RcppExports.cpp
History View file @ 536fd2e
... ... 
@@ -1,7 +1,6 @@
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 // Generated by using Rcpp::compileAttributes() -> do not edit by hand
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 // Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
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-#include <RcppGSL.h>
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 #include <Rcpp.h>
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 using namespace Rcpp;
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win version

RoseHuRan authored on 29/03/2022 16:48:36
Showing 1 changed files
src/RcppExports.cpp
History View file @ d9dc0e6
... ... 
@@ -1,6 +1,7 @@
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 // Generated by using Rcpp::compileAttributes() -> do not edit by hand
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 // Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
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+#include <RcppGSL.h>
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 #include <Rcpp.h>
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 using namespace Rcpp;
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add files

RoseHuRan authored on 27/03/2022 20:48:07
Showing 1 changed files
src/RcppExports.cpp
History View file @ 33de83c
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new file mode 100644
... ... 
@@ -0,0 +1,39 @@
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+// Generated by using Rcpp::compileAttributes() -> do not edit by hand
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+// Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
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+
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+#include <Rcpp.h>
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+
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+using namespace Rcpp;
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+
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+#ifdef RCPP_USE_GLOBAL_ROSTREAM
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+Rcpp::Rostream<true>&  Rcpp::Rcout = Rcpp::Rcpp_cout_get();
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+Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get();
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+#endif
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+
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+// read_deconvolution_cpp
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+void read_deconvolution_cpp(std::string reads_binning_file, int num_tissues, double min_likelihood_ratio_cutoff, std::string tissue_markers_file, std::string em_algorithm_type, std::string output_file, std::string output_type, int em_max_iterations);
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+RcppExport SEXP _cfTools_read_deconvolution_cpp(SEXP reads_binning_fileSEXP, SEXP num_tissuesSEXP, SEXP min_likelihood_ratio_cutoffSEXP, SEXP tissue_markers_fileSEXP, SEXP em_algorithm_typeSEXP, SEXP output_fileSEXP, SEXP output_typeSEXP, SEXP em_max_iterationsSEXP) {
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+BEGIN_RCPP
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+    Rcpp::RNGScope rcpp_rngScope_gen;
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+    Rcpp::traits::input_parameter< std::string >::type reads_binning_file(reads_binning_fileSEXP);
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+    Rcpp::traits::input_parameter< int >::type num_tissues(num_tissuesSEXP);
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+    Rcpp::traits::input_parameter< double >::type min_likelihood_ratio_cutoff(min_likelihood_ratio_cutoffSEXP);
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+    Rcpp::traits::input_parameter< std::string >::type tissue_markers_file(tissue_markers_fileSEXP);
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+    Rcpp::traits::input_parameter< std::string >::type em_algorithm_type(em_algorithm_typeSEXP);
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+    Rcpp::traits::input_parameter< std::string >::type output_file(output_fileSEXP);
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+    Rcpp::traits::input_parameter< std::string >::type output_type(output_typeSEXP);
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+    Rcpp::traits::input_parameter< int >::type em_max_iterations(em_max_iterationsSEXP);
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+    read_deconvolution_cpp(reads_binning_file, num_tissues, min_likelihood_ratio_cutoff, tissue_markers_file, em_algorithm_type, output_file, output_type, em_max_iterations);
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+    return R_NilValue;
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+END_RCPP
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+}
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+
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+static const R_CallMethodDef CallEntries[] = {
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+    {"_cfTools_read_deconvolution_cpp", (DL_FUNC) &_cfTools_read_deconvolution_cpp, 8},
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+    {NULL, NULL, 0}
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+};
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+
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+RcppExport void R_init_cfTools(DllInfo *dll) {
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+    R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
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+    R_useDynamicSymbols(dll, FALSE);
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+}