Implement KmerTable and BucketKmerTable in Rust#859
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padix-key wants to merge 4 commits intobiotite-dev:rustfrom
Draft
Implement KmerTable and BucketKmerTable in Rust#859padix-key wants to merge 4 commits intobiotite-dev:rustfrom
KmerTable and BucketKmerTable in Rust#859padix-key wants to merge 4 commits intobiotite-dev:rustfrom
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Merging this PR will not alter performance
Performance Changes
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Currently
KmerTableandBucketKmerTableare implemented in Cython. However the code is a bit cumbersome, has some degree of code duplication and, since pointer handling is involved, memory safety could pose an issue. All these problems can be mitigated by using a Rust implementation instead.