G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
Seamless Integration of BLAST Sequence Searches in R
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
genomic alignment similarity search tool
Microsoft Azure HPC & Big Compute
Pipeline to create phage genome synteny graphics from genbank files
Obsolete!! Begin to turn to PrimerServer2
A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis
A beginner’s guide to Bioinformatics
PhylUp - a python package to automatically generate alignments (or update alignments and phylogenies) using local sequences or a local Genbank database while controlling for the number of sequences per OTU.
A program used to find indels on target gene edited by CRISPR/Cas9
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…
Parser of BLAST results
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
Python pipeline for automated synteny block detection and visualization from multiple genomes.
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
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