Thanks to visit codestin.com
Credit goes to github.com

Skip to content

update AlphaFold links - #137

Merged
Oxer11 merged 1 commit into
DeepGraphLearning:masterfrom
ShoufaChen:master
Sep 30, 2022
Merged

Oxer11 merged 1 commit into
DeepGraphLearning:masterfrom
ShoufaChen:master

Conversation

@ShoufaChen

Copy link
Copy Markdown
Contributor

Data links in alphafolddb.py are outdated.
From https://ftp.ebi.ac.uk/pub/databases/alphafold/, latest AlphaFold is v3. Some data, e.g., UP000006548_3702_ARATH_v2.tar does not exist in v3.

Just change the xxx/latest/xxx to xxx/v2/xxx in the links.

Moreover, the md5sum values are not right. I just double-checked and modified the md5sum of UP000006548_3702_ARATH_v2.tar. Other md5sum values might also need to be updated.

Data links in `alphafolddb.py` are outdated.
From https://ftp.ebi.ac.uk/pub/databases/alphafold/, latest AlphaFold
is **v3**. Some data, e.g., `UP000006548_3702_ARATH_v2.tar` does not
exist in v3.

Just change the `xxx/latest/xxx` to `xxx/v2/xxx` in the links.

Moreover, the md5sum values are not right. I just double-checked and
modified the md5sum of `UP000006548_3702_ARATH_v2.tar`. Other md5sum
values might also need to be updated.
@Oxer11
Oxer11 merged commit 02fb1e8 into DeepGraphLearning:master Sep 30, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants