Deltares · Manangka · Feb 2, 2024 · Feb 2, 2024 · Feb 2, 2024
diff --git a/examples/mf6/circle_partitioned.py b/examples/mf6/circle_partitioned.py
@@ -7,6 +7,7 @@
 case the 3 submodels are roughly equal sized partitions that have the shape
 of pie pieces.
 """
+
 import matplotlib.pyplot as plt
 from example_models import create_circle_simulation
 

diff --git a/examples/mf6/different_ways_to_regrid_models.py b/examples/mf6/different_ways_to_regrid_models.py
@@ -15,6 +15,7 @@
 regridding method for the horizontal conductivity field
 
 """
+
 # %%
 # We'll start with the usual imports. As this is an simple (synthetic)
 # structured model, we can make due with few packages.

diff --git a/examples/mf6/ex01_twri.py b/examples/mf6/ex01_twri.py
@@ -23,6 +23,7 @@
     * Visualize the results.
 
 """
+
 # %%
 # We'll start with the usual imports. As this is an simple (synthetic)
 # structured model, we can make due with few packages.

diff --git a/examples/mf6/example_1d_transport.py b/examples/mf6/example_1d_transport.py
@@ -23,6 +23,7 @@
   shape of the front of the solute plume.
 
 """
+
 # %%
 
 import numpy as np

diff --git a/examples/mf6/example_models.py b/examples/mf6/example_models.py
@@ -7,6 +7,7 @@
 with it (such as regridding).
 
 """
+
 import numpy as np
 import scipy.ndimage
 import xarray as xr

diff --git a/examples/mf6/lake.py b/examples/mf6/lake.py
@@ -17,6 +17,7 @@
     * Visualize the results.
 
 """
+
 # %%
 # We'll start with the usual imports. As this is an simple (synthetic)
 # structured model, we can make due with few packages.

diff --git a/examples/prepare/reproject.py b/examples/prepare/reproject.py
@@ -5,6 +5,7 @@
 In this example we will see how to reproject vector and raster datasets.
 
 """
+
 import matplotlib.pyplot as plt
 import pyproj
 

diff --git a/examples/user-guide/01-raster-data.py b/examples/user-guide/01-raster-data.py
@@ -27,6 +27,7 @@
 conveniences for such data, such as plotting or selecting. To demonstrate,
 we'll get some sample data provided with the imod package.
 """
+
 import xarray as xr
 
 # %%

diff --git a/examples/user-guide/02-vector-data.py b/examples/user-guide/02-vector-data.py
@@ -35,6 +35,7 @@
 DataFrame to store tabular data (the attribute table), and adds a geometry
 column to store the geospatial coordinates.
 """
+
 # %%
 import geopandas as gpd
 import numpy as np

diff --git a/examples/user-guide/05-unstructured-grids.py b/examples/user-guide/05-unstructured-grids.py
@@ -8,6 +8,7 @@
 2D), or 6 neighbors (in 3D).
 
 """
+
 # %%
 
 

diff --git a/examples/user-guide/06-lazy-evaluation.py b/examples/user-guide/06-lazy-evaluation.py
@@ -20,6 +20,7 @@
 
 We will explain these concepts with a number of examples.
 """
+
 # %%
 import dask.array
 import numpy as np

diff --git a/imod/data/sample_data.py b/imod/data/sample_data.py
@@ -1,6 +1,7 @@
 """
 Functions to load sample data.
 """
+
 import importlib
 from pathlib import Path
 from typing import Union

diff --git a/imod/formats/prj/disv_conversion.py b/imod/formats/prj/disv_conversion.py
@@ -2,6 +2,7 @@
 Most of the functionality here attempts to replicate what iMOD does with
 project files.
 """
+
 import itertools
 import pickle
 from collections import Counter

diff --git a/imod/formats/prj/prj.py b/imod/formats/prj/prj.py
@@ -1,6 +1,7 @@
 """
 Utilities for parsing a project file.
 """
+
 import shlex
 from collections import defaultdict
 from datetime import datetime

diff --git a/imod/mf6/adv.py b/imod/mf6/adv.py
@@ -8,6 +8,7 @@
 Upstream weighting is a fast alternative, and TVD is a more expensive and more
 robust alternative.
 """
+
 from copy import deepcopy
 
 from imod.mf6.package import Package

diff --git a/imod/mf6/interfaces/ipackage.py b/imod/mf6/interfaces/ipackage.py
@@ -5,7 +5,6 @@
 
 
 class IPackage(IPackageBase, metaclass=abc.ABCMeta):
-
     """
     The base methods and attributes available in all packages
     """

diff --git a/imod/mf6/mf6_wel_adapter.py b/imod/mf6/mf6_wel_adapter.py
@@ -11,6 +11,7 @@
 GIS systems. The low-level classes contain a dataset based on cellid,
 consisting of layer, row, and column, closely resembling input for Modflow6.
 """
+
 from typing import Optional
 
 import numpy as np

diff --git a/imod/mf6/out/__init__.py b/imod/mf6/out/__init__.py
@@ -37,6 +37,7 @@ def open_cbc(
 (These could be implemented via Reader classes, but why bother with mutable
 state or a class with exclusively staticmethods?)
 """
+
 from typing import Any, Callable, Dict, Optional, Union
 
 import numpy as np

diff --git a/imod/mf6/out/cbc.py b/imod/mf6/out/cbc.py
@@ -1,6 +1,7 @@
 """
 Cell-by-cell flows
 """
+
 import os
 import struct
 from collections import defaultdict

diff --git a/imod/mf6/package.py b/imod/mf6/package.py
@@ -547,9 +547,9 @@ def mask(self, domain: GridDataArray) -> Any:
                     if is_scalar(da.values[()]):
                         masked[var] = da.values[()]  # For scalars, such as options
                     else:
-                        masked[
-                            var
-                        ] = da  # For example for arrays with only a layer dimension
+                        masked[var] = (
+                            da  # For example for arrays with only a layer dimension
+                        )
                 else:
                     masked[var] = None
 

diff --git a/imod/mf6/validation.py b/imod/mf6/validation.py
@@ -1,6 +1,7 @@
 """
 This module contains specific validation utilities for Modflow 6.
 """
+
 import numpy as np
 import xarray as xr
 

diff --git a/imod/msw/landuse.py b/imod/msw/landuse.py
@@ -160,12 +160,12 @@ def __init__(
         self.dataset["start_sprinkling_season"] = start_sprinkling_season
         self.dataset["end_sprinkling_season"] = end_sprinkling_season
         self.dataset["interception_option"] = interception_option
-        self.dataset[
-            "interception_capacity_per_LAI_Rutter"
-        ] = interception_capacity_per_LAI
-        self.dataset[
-            "interception_capacity_per_LAI_VonHoyningen"
-        ] = interception_capacity_per_LAI
+        self.dataset["interception_capacity_per_LAI_Rutter"] = (
+            interception_capacity_per_LAI
+        )
+        self.dataset["interception_capacity_per_LAI_VonHoyningen"] = (
+            interception_capacity_per_LAI
+        )
         self.dataset["interception_intercept"] = interception_intercept
 
         self._pkgcheck()

diff --git a/imod/msw/model.py b/imod/msw/model.py
@@ -100,9 +100,9 @@ def __init__(self, unsaturated_database):
         super().__init__()
 
         self.simulation_settings = copy(DEFAULT_SETTINGS)
-        self.simulation_settings[
-            "unsa_svat_path"
-        ] = self._render_unsaturated_database_path(unsaturated_database)
+        self.simulation_settings["unsa_svat_path"] = (
+            self._render_unsaturated_database_path(unsaturated_database)
+        )
 
     def _render_unsaturated_database_path(self, unsaturated_database):
         # Force to Path object

diff --git a/imod/prepare/common.py b/imod/prepare/common.py
@@ -5,6 +5,7 @@
 xarray.DataArrays, as well as aggregation methods operating on weights and
 values.
 """
+
 import cftime
 import numba
 import numpy as np

diff --git a/imod/prepare/interpolate.py b/imod/prepare/interpolate.py
@@ -94,6 +94,7 @@
 * nd_interp: collects the weights, reshapes the array so iter_interp will take
     it.
 """
+
 import numba
 import numpy as np
 

diff --git a/imod/prepare/pcg.py b/imod/prepare/pcg.py
@@ -2,6 +2,7 @@
 
 This is a translation of the fortran77 modflow2000 pcg2.f module.
 """
+
 import numba
 
 

diff --git a/imod/prepare/regrid.py b/imod/prepare/regrid.py
@@ -24,6 +24,7 @@
 values from the source array (src), and pass it on to the aggregation method.
 The single aggregated value is then filled into the destination array (dst).
 """
+
 from collections import namedtuple
 
 import dask

diff --git a/imod/prepare/wells.py b/imod/prepare/wells.py
@@ -1,6 +1,7 @@
 """
 Assign wells to layers.
 """
+
 from typing import Optional, Union
 
 import numpy as np

diff --git a/imod/tests/fixtures/mf6_small_models_fixture.py b/imod/tests/fixtures/mf6_small_models_fixture.py
@@ -73,8 +73,10 @@ def grid_data_unstructured_layered(
 
 
 def _make_model(
-    grid_data_function: Callable[[type, Union[int, float], float], xr.DataArray]
-    | Callable[[type, Union[int, float], float], xu.UgridDataArray],
+    grid_data_function: (
+        Callable[[type, Union[int, float], float], xr.DataArray]
+        | Callable[[type, Union[int, float], float], xu.UgridDataArray]
+    ),
     cellsize: float,
 ) -> imod.mf6.GroundwaterFlowModel:
     gwf_model = imod.mf6.GroundwaterFlowModel()

diff --git a/imod/tests/test_mf6/test_mf6_hfb.py b/imod/tests/test_mf6/test_mf6_hfb.py
@@ -302,9 +302,9 @@ def test_to_mf6_remove_invalid_edges(
 ):
     # Arrange.
     idomain, top, bottom = parameterizable_basic_dis
-    idomain.loc[
-        {"x": idomain.coords["x"][-1]}
-    ] = inactivity_marker  # make cells inactive
+    idomain.loc[{"x": idomain.coords["x"][-1]}] = (
+        inactivity_marker  # make cells inactive
+    )
     k = ones_like(top)
 
     barrier_y = [0.0, 2.0]

diff --git a/imod/tests/test_mf6/test_mf6_uzf_model.py b/imod/tests/test_mf6/test_mf6_uzf_model.py
@@ -111,9 +111,9 @@ def uzf_model():
     )
     uds["extinction_depth"] = ones_shape_time * -10.0
 
-    uds[
-        "simulate_groundwater_seepage"
-    ] = False  # Model doesn't converge if set to True....
+    uds["simulate_groundwater_seepage"] = (
+        False  # Model doesn't converge if set to True....
+    )
 
     gwf_model["uzf"] = imod.mf6.UnsaturatedZoneFlow(**uds)
 

diff --git a/imod/tests/test_mf6/test_package_sanity.py b/imod/tests/test_mf6/test_package_sanity.py
@@ -11,6 +11,7 @@
 * Tests whether writing and saving results in the same object state (as Python
   None is turned into numpy NaN).
 """
+
 import inspect
 
 import numpy as np
-Original file line number
+Diff line change
@@ Expand Up / @@ -15,6 +15,7 @@ @@
     regridding method for the horizontal conductivity field
     """
     # %%
     # We'll start with the usual imports. As this is an simple (synthetic)
     # structured model, we can make due with few packages.
@@ Expand Down @@
Original file line number	Diff line number	Diff line change
Expand Up		@@ -8,6 +8,7 @@
		2D), or 6 neighbors (in 3D).

		"""

		# %%


Expand Down
Original file line number	Diff line number	Diff line change
Expand Up		@@ -2,6 +2,7 @@

		This is a translation of the fortran77 modflow2000 pcg2.f module.
		"""

		import numba


Expand Down