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@DigitalSlideArchive

Digital Slide Archive

Tools for the management, visualization, and analysis of digital pathology data.

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  1. digital_slide_archive digital_slide_archive Public

    The official deployment of the Digital Slide Archive and HistomicsTK.

    Python 120 55

  2. HistomicsTK HistomicsTK Public

    A Python toolkit for pathology image analysis algorithms.

    Python 418 119

  3. HistomicsUI HistomicsUI Public

    A Girder plugin for pathology image annotations and analysis.

    JavaScript 70 25

Repositories

Showing 10 of 37 repositories
  • wsi-superpixel-guided-labeling Public

    A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images

    DigitalSlideArchive/wsi-superpixel-guided-labeling’s past year of commit activity
    Vue 3 6 12 4 Updated May 8, 2025
  • girder_volview Public
    DigitalSlideArchive/girder_volview’s past year of commit activity
    Python 3 2 8 1 Updated May 8, 2025
  • HistomicsUI Public

    A Girder plugin for pathology image annotations and analysis.

    DigitalSlideArchive/HistomicsUI’s past year of commit activity
    JavaScript 70 Apache-2.0 25 50 2 Updated May 8, 2025
  • dive-dsa Public

    DIVE for Digital Slide Archive

    DigitalSlideArchive/dive-dsa’s past year of commit activity
    Vue 1 Apache-2.0 0 7 4 Updated May 8, 2025
  • digital_slide_archive Public

    The official deployment of the Digital Slide Archive and HistomicsTK.

    DigitalSlideArchive/digital_slide_archive’s past year of commit activity
    Python 120 Apache-2.0 55 27 0 Updated May 8, 2025
  • histomics_aws_deployment Public

    Infrastructure-as-code scripts for deploying high-availability, scalable Histomics on AWS

    DigitalSlideArchive/histomics_aws_deployment’s past year of commit activity
    HCL 0 0 4 0 Updated May 7, 2025
  • DSA-WSI-DeID Public

    A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

    DigitalSlideArchive/DSA-WSI-DeID’s past year of commit activity
    Python 16 Apache-2.0 8 15 0 Updated May 5, 2025
  • superpixel-classification Public

    A test cli for classifying superpixels with arbitrary labels

    DigitalSlideArchive/superpixel-classification’s past year of commit activity
    Python 5 4 1 1 Updated May 5, 2025
  • HistomicsTK Public

    A Python toolkit for pathology image analysis algorithms.

    DigitalSlideArchive/HistomicsTK’s past year of commit activity
    Python 418 Apache-2.0 119 23 1 Updated Apr 30, 2025
  • tifftools Public

    Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.

    DigitalSlideArchive/tifftools’s past year of commit activity
    Python 53 6 3 0 Updated Apr 18, 2025
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