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Heatmap: add clustering view#3035

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vladsavelyev merged 9 commits into
mainfrom
dendro
Jan 7, 2025
Merged

Heatmap: add clustering view#3035
vladsavelyev merged 9 commits into
mainfrom
dendro

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@vladsavelyev

@vladsavelyev vladsavelyev commented Dec 29, 2024 •
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Add clustered view for the heatmap. On by default.

This version requires scipy as a dependency, which is not ideal, which would increase the image size by 16%. Will look into getting around without scipy.

Screenshot 2024-12-30 at 00 00 58

UPD: reimplemented without scipy dependency.

plot=heatmap.plot(rows, samples, samples, {
    "id": "deeptools_correlation_plot",
    "title": "deeptools: Correlation Plot",
    "cluster_rows": True,
    "cluster_cols": True,
    "cluster_switch_clustered_active": True,
}),
Screenshot 2024-12-29 at 23 47 22

@vladsavelyev vladsavelyev added this to the v1.27 milestone Dec 29, 2024
@vladsavelyev vladsavelyev mentioned this pull request Dec 29, 2024
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@vladsavelyev vladsavelyev merged commit 4b72254 into main Jan 7, 2025
@vladsavelyev vladsavelyev deleted the dendro branch January 7, 2025 10:16
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