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Paper under peer-review.
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Paper under peer-review.
4 followers · 20 following
  • Italy, Netherlands

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NCMBianchi/README.md

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2024 MSc graduate in Bioinformatics for computational genomics, interested in developing data analysis pipeline and tools to facilitate scientific research (mostly in Python and R).

Expertise Level Bioinformatics Tools (Python, R, CLI)
💻 DATA ANALYSIS Pandas Numpy SciPy ScanPy edgeR DeSeq2 Seurat Bowtie
📊 VISUALISATION Matplotlib Plotly ggplot2 Seaborn 
Expertise Level Coding Languages & Tools
🟢 ADVANCED Python Jupyter R Git
🟠 INTERMEDIATE MySQL PyTorch XGBoost HTML CSS JavaScript
🟡 BASIC Apache Spark Flask GraphQL Rust TensorFlow Nextflow
📚 TO LEARN Java Kotlin Django Bun Bootstrap Cuda Snakemake

My hobbies include analog and digital photography, creative writing, graphic design, coffee and tea brewing, and custom keyboards.


Expertise Level Tools
🟢 ADVANCED Photoshop Illustrator In Design Lightroom Lucidcharts Procreate
🟡 BASIC Premiere Pro Stable Diffusion Canva Final Draft QMK Arduino

Pinned Loading

  1. DrugRepurposing DrugRepurposing Public

    Forked from carmenreep/DrugRepurposing

    Automated drug repurposing pipeline for rare diseases – using Jupyter Notebook, Docker-compose, Flask, Monarch API, DGIdb API, RDkit, Node2vec, XGboost and Torch-geometric.

    Python 1 1

  2. x86_bioinformatics_setup x86_bioinformatics_setup Public

    A simple bash script to install bioinformatics tools that require x86_64 architecture.

    Shell

  3. scCulturePredict scCulturePredict Public

    An R package to extrapolate phenotypic fingerprint from RNAseq to determine cell culture media.

    R

  4. geneObjects geneObjects Public

    A test GitHub repository for an R package (as part of the Scientific Programming exam).

    R

  5. OMIM-converter OMIM-converter Public

    a JavaScript conversion tool for Open Data Science URIs

    JavaScript

  6. resume-cli resume-cli Public

    Forked from karanpargal/resume-cli

    A portfolio made using Rust on CLI

    Rust