Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Pull requests: NVIDIA-BioNeMo/bionemo-recipes

New pull request New
199 Open 1,411 Closed
199 Open 1,411 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Consolidate open dependabot dependency bumps
#1749 opened Sep 11, 2026 by pstjohn Collaborator Loading…
3 of 9 tasks
@pstjohn
3
Fix flaky CUDA init error in esm2_native_te DataLoader workers
#1743 opened Sep 8, 2026 by nipunsw1999 Loading…
3 of 9 tasks
1
2
Bump transformers from 4.51.3 to 5.10.1 in /models/geneformer dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1736 opened Sep 3, 2026 by dependabot Bot Loading…
2
Bump qs from 6.14.1 to 6.16.0 in /interpretability/sparse_autoencoders/recipes/esm2/protein_dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1734 opened Sep 2, 2026 by dependabot Bot Loading…
2
Bump nanoid from 3.3.11 to 3.3.18 in /interpretability/sparse_autoencoders/recipes/codonfm/codon_dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1733 opened Sep 2, 2026 by dependabot Bot Loading…
2
Bump browserslist from 4.28.1 to 4.28.8 in /interpretability/sparse_autoencoders/sae/src/sae/dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1731 opened Sep 1, 2026 by dependabot Bot Loading…
2
Bump nanoid from 3.3.11 to 3.3.18 in /interpretability/sparse_autoencoders/sae/src/sae/dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1730 opened Sep 1, 2026 by dependabot Bot Loading…
3
TE Recipes Acceleration Skill
#1727 opened Aug 31, 2026 by zoeyz101 Collaborator Loading…
4 of 8 tasks
35
Improved PhiX174 Phage Design Plausibility
#1722 opened Aug 28, 2026 by jstjohn Collaborator • Draft
3 of 9 tasks
3
Bump hydra-core from 1.3.2 to 1.3.4 in /interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1720 opened Aug 21, 2026 by dependabot Bot Loading…
2
Bump gitpython from 3.1.45 to 3.1.58 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1713 opened Aug 7, 2026 by dependabot Bot Loading…
2
Bump h2 from 4.3.0 to 4.4.1 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1712 opened Aug 7, 2026 by dependabot Bot Loading…
2
Bump cryptography from 42.0.8 to 50.0.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1709 opened Aug 5, 2026 by dependabot Bot Loading…
2
Bump gitpython from 3.1.46 to 3.1.57 in /interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1708 opened Aug 4, 2026 by dependabot Bot Loading…
2
Bump black from 25.1.0 to 26.3.1 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1706 opened Aug 4, 2026 by dependabot Bot Loading…
2
docs(esm2_native_te): add torch.compile troubleshooting note ciflow:skip Skip all CI tests for this PR
#1703 opened Jul 30, 2026 by melissa-sanabria Loading…
1 of 9 tasks
5
gpt2 SAE recipe: interactive feature-explorer dashboard
#1697 opened Jul 28, 2026 by polinabinder1 Contributor • Draft
2
Bump postcss from 8.5.6 to 8.5.23 in /interpretability/sparse_autoencoders/sae/src/sae/dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1694 opened Jul 27, 2026 by dependabot Bot Loading…
2
Bump ray from 2.49.2 to 2.56.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1693 opened Jul 27, 2026 by dependabot Bot Loading…
2
Bump setuptools from 79.0.1 to 83.0.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1691 opened Jul 22, 2026 by dependabot Bot Loading…
2
Add HuggingFace naive-pipeline-parallel baseline for Mixtral-8x7B benchmarks
#1689 opened Jul 20, 2026 by faradawn Loading…
2
Fix Evo2TaxonomyLineage.kingdom -> domain rename in docs
#1688 opened Jul 19, 2026 by jannis-baum Contributor Loading…
5 of 9 tasks
2
Bump torch from 2.9.1 to 2.13.0 in /interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1687 opened Jul 17, 2026 by dependabot Bot Loading…
2
Bump sh from 2.2.2 to 2.2.4 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1686 opened Jul 17, 2026 by dependabot Bot Loading…
2
ci(interp): test the shared sae library, not just the recipes
#1685 opened Jul 14, 2026 by polinabinder1 Contributor • Draft
2
ProTip! Updated in the last three days: updated:>2026-09-10.