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Commits on Oct 24, 2025

• Bump schema version

  davmlaw

  committed
  14788da

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• Update gencode for latest Ensembl 115 (https://www.gencodegenes.org/human/)

  davmlaw

  committed
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Commits on Oct 8, 2025

• SACGF/cdot#99 - Store extra fields from GTF

  davmlaw

  committed
  982ed49

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• Update release to latest data

  davmlaw

  committed
  3c33103

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• SACGF/cdot#99 - Start storing GFF/GTF source

  davmlaw

  committed
  ba5c68c

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• update git ignore

  davmlaw

  committed
  934f5ca

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Commits on Sep 29, 2025

• Ensembl 115 now up

  davmlaw

  committed
  27933ef

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Commits on Aug 18, 2025

• SACGF/cdot#98 - show URLs instead of filenames

  davmlaw

  committed
  2be0415

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• SACGF/cdot#98 - show URLs instead of filenames

  davmlaw

  committed
  7e0967b

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• SACGF/cdot#98 - Provide methods in JSON, and build for release - use file

  davmlaw

  committed
  0678d76

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• SACGF/cdot#98 - Provide methods in JSON, and build for release

  davmlaw

  committed
  08211e2

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• New RefSeq - 2025_08 GRCh38 and T2T

  davmlaw

  committed
  e04e93d

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• Use common JSON writing method

  davmlaw

  committed
  6f36b6c

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Commits on Jul 29, 2025

• Separate methods to retrieve version

  davmlaw

  committed
  caf50a2

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• Separate methods to be able to get all URLs if you want

  davmlaw

  committed
  055cd52

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Commits on Jul 25, 2025

• SACGF/cdot#36 - canonical transcripts - need to add tags to genome build specific data

  davmlaw

  committed
  a7be41b

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• SACGF/cdot#36 - canonical transcripts - add Ensembl_canonical to Ensembl/37

  davmlaw

  committed
  8792491

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• Add missing refseq all builds file

  davmlaw

  committed
  233a5d5

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Commits on Jul 18, 2025

• bump version

  davmlaw

  committed
  048e71c

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• SACGF/cdot#96 - refseq/ensembl combo files contain both annotation consortiums

  davmlaw

  committed
  c67ace7

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• SACGF/cdot#97 - Ensembl HGNC

  davmlaw

  committed
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Commits on Jul 14, 2025

• SACGF/cdot#97 - Ensembl HGNC

  davmlaw

  committed
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• SACGF/cdot#97 - Ensembl HGNC

  davmlaw

  committed
  94024df

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• Fix typo breaking rule all

  davmlaw

  committed
  4a5e094

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Commits on Jun 26, 2025

• SACGF/cdot#94 - make filenames match what's expected on data_release - get_latest_combo_file_urls

  davmlaw

  committed
  b80fe75

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Commits on Jun 25, 2025

• SACGF/cdot#92 - SnakeMake - add missing import

  davmlaw

  committed
  468d873

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• Force always build files as not intermediaries

  Show description for 06a469a
  davmlaw

  committed
  06a469a

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• Update changelog

  davmlaw

  committed
  83af6ac

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• SACGF/cdot#92 - SnakeMake - remove old bash scripts

  davmlaw

  committed
  f5b9d51

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• SACGF/cdot#92 - SnakeMake - correct GTFs after testing revealed missing transcripts

  davmlaw

  committed
  82653a9

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• Don't hardcode date

  davmlaw

  committed
  9320a6e

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• SACGF/cdot#92 - combine builds in SnakeMake - properly separate refseq/ensembl

  davmlaw

  committed
  daa9526

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• SACGF/cdot#92 - combine builds in SnakeMake

  davmlaw

  committed
  f3cc589

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Commits on Jun 24, 2025

• Make gene data named after today (as it could change). Don't write protect generated files

  davmlaw

  committed
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Commits on Jun 23, 2025

• Add property for backwards compatability

  davmlaw

  committed
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