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Update docs to include how exons work etc

Status: Open.

#102 In SACGF/cdot;

· davmlaw opened on Dec 5, 2025

Refactor GTF/GFF code to split out RefSeq/Ensembl

Status: Open.

#101 In SACGF/cdot;

· davmlaw opened on Oct 8, 2025

Move domain off .cc

Status: Open.

#100 In SACGF/cdot;

· davmlaw opened on Oct 8, 2025

Store GTF/GFF source, transcript_support_level and CDS

Status: Open.

#99 In SACGF/cdot;

· davmlaw opened on Oct 8, 2025

Choice of transcript version has changed (NM_001017995.2 uses UTA 20241220)

Status: Open.

#95 In SACGF/cdot;

· lhomas opened on Jul 2, 2025

Move HGVSConverter (PyHGVS/Biocommons abstraction) code from VG to cdot

Status: Open.

#93 In SACGF/cdot;

· davmlaw opened on Jun 25, 2025

Investigate using GENCODE as a source of transcripts

Status: Open.

#90 In SACGF/cdot;

· davmlaw opened on Jan 14, 2025

Accessing transcript data for genes from bacterial artificial chromosomes (BACs)

Status: Open.

#89 In SACGF/cdot;

· jarbesfeld opened on Jan 9, 2025

Make a proper release

Status: Open.

#85 In SACGF/cdot;

· davmlaw opened on Aug 26, 2024

FastaSeqFetcher improvements

Status: Open.

#84 In SACGF/cdot;

· davmlaw opened on Aug 26, 2024

JSON breaking schema changes

Status: Open.

#78 In SACGF/cdot;

· davmlaw opened on Mar 12, 2024

Document JSON.gz files, and Transcript format

Status: Open.

#77 In SACGF/cdot;

· davmlaw opened on Mar 12, 2024