Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Commit bfd5d07

Browse files
noerogchenyumic
noerog
authored and
chenyumic
committed
Add CHC API alpha datasets and FHIR samples and tests. (GoogleCloudPlatform#1783)
* Add CHC API datasets samples and tests. * Add CHC API alpha FHIR samples and tests * Fix lint error. ./fhir_resources.py:330:80: E501 line too long (91 > 79 characters) resource_path = '{}/datasets/{}/fhirStores/{}/resources/Patient/{}/$everything'.format( * Fix lint errors. ./fhir_resources_test.py:22:1: E402 module level import not at top of file import datasets ^ ./fhir_resources_test.py:23:1: E402 module level import not at top of file import fhir_stores ^ ./fhir_resources_test.py:24:1: E402 module level import not at top of file import fhir_resources ^ * Fix lint errors. ./fhir_stores.py:85:80: E501 line too long (82 > 79 characters) fhir_store_name = 'projects/{}/locations/{}/datasets/{}/fhirStores/{}'.format( ^ ./fhir_stores.py:111:80: E501 line too long (82 > 79 characters) fhir_store_name = 'projects/{}/locations/{}/datasets/{}/fhirStores/{}'.format( ^ ./fhir_stores.py:340:5: E303 too many blank lines (2) command = parser.add_subparsers(dest='command') ^ ./fhir_stores.py:347:80: E501 line too long (81 > 79 characters) command.add_parser('export-fhir-resource', help=import_fhir_resource.__doc__) ^ ./fhir_stores.py:348:80: E501 line too long (81 > 79 characters) command.add_parser('import-fhir-resource', help=export_fhir_resource.__doc__) ^ ./fhir_stores.py:349:1: W293 blank line contains whitespace * Fix lint errors. ./fhir_stores_test.py:22:1: E402 module level import not at top of file import datasets ^ ./fhir_stores_test.py:23:1: E402 module level import not at top of file import fhir_stores * Remove blank line. * Remove blank line. * Remove blank line. * Remove blank line.
1 parent cce955f commit bfd5d07

File tree

12 files changed

+2228
-0
lines changed

12 files changed

+2228
-0
lines changed

‎healthcare/api-client/datasets/README.rst

Lines changed: 154 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,154 @@
1+
.. This file is automatically generated. Do not edit this file directly.
2+
3+
Cloud Healthcare API Python Samples
4+
===============================================================================
5+
6+
.. image:: https://gstatic.com/cloudssh/images/open-btn.png
7+
:target: https://console.cloud.google.com/cloudshell/open?git_repo=https://github.com/GoogleCloudPlatform/python-docs-samples&page=editor&open_in_editor=healthcare/api-client/datasets/README.rst
8+
9+
10+
This directory contains samples for Cloud Healthcare API. `Cloud Healthcare API`_ implements healthcare-native protocols and formats to accelerate ingestion, storage, analysis, and integration of healthcare data with cloud-based applications.
11+
- See the `migration guide`_ for information about migrating to Python client library v0.25.1.
12+
13+
.. _migration guide: https://cloud.google.com/vision/docs/python-client-migration
14+
15+
16+
17+
18+
.. _Cloud Healthcare API: https://cloud.google.com/healthcare/docs
19+
20+
Setup
21+
-------------------------------------------------------------------------------
22+
23+
24+
Authentication
25+
++++++++++++++
26+
27+
This sample requires you to have authentication setup. Refer to the
28+
`Authentication Getting Started Guide`_ for instructions on setting up
29+
credentials for applications.
30+
31+
.. _Authentication Getting Started Guide:
32+
https://cloud.google.com/docs/authentication/getting-started
33+
34+
Authentication
35+
++++++++++++++
36+
37+
Authentication for this service is done via an `API Key`_. To obtain an API
38+
Key:
39+
40+
1. Open the `Cloud Platform Console`_
41+
2. Make sure that billing is enabled for your project.
42+
3. From the **Credentials** page, create a new **API Key** or use an existing
43+
one for your project.
44+
45+
.. _API Key:
46+
https://developers.google.com/api-client-library/python/guide/aaa_apikeys
47+
.. _Cloud Console: https://console.cloud.google.com/project?_
48+
49+
Install Dependencies
50+
++++++++++++++++++++
51+
52+
#. Clone python-docs-samples and change directory to the sample directory you want to use.
53+
54+
.. code-block:: bash
55+
56+
$ git clone https://github.com/GoogleCloudPlatform/python-docs-samples.git
57+
58+
#. Install `pip`_ and `virtualenv`_ if you do not already have them. You may want to refer to the `Python Development Environment Setup Guide`_ for Google Cloud Platform for instructions.
59+
60+
.. _Python Development Environment Setup Guide:
61+
https://cloud.google.com/python/setup
62+
63+
#. Create a virtualenv. Samples are compatible with Python 2.7 and 3.4+.
64+
65+
.. code-block:: bash
66+
67+
$ virtualenv env
68+
$ source env/bin/activate
69+
70+
#. Install the dependencies needed to run the samples.
71+
72+
.. code-block:: bash
73+
74+
$ pip install -r requirements.txt
75+
76+
.. _pip: https://pip.pypa.io/
77+
.. _virtualenv: https://virtualenv.pypa.io/
78+
79+
Samples
80+
-------------------------------------------------------------------------------
81+
82+
Datasets
83+
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
84+
85+
.. image:: https://gstatic.com/cloudssh/images/open-btn.png
86+
:target: https://console.cloud.google.com/cloudshell/open?git_repo=https://github.com/GoogleCloudPlatform/python-docs-samples&page=editor&open_in_editor=healthcare/api-client/datasets/datasets.py,healthcare/api-client/datasets/README.rst
87+
88+
89+
90+
91+
To run this sample:
92+
93+
.. code-block:: bash
94+
95+
$ python datasets.py
96+
97+
usage: datasets.py [-h] --service_account_json SERVICE_ACCOUNT_JSON --api_key
98+
API_KEY --project_id PROJECT_ID --cloud_region CLOUD_REGION
99+
--dataset_id DATASET_ID [--time_zone TIME_ZONE]
100+
[--destination_dataset_id DESTINATION_DATASET_ID]
101+
[--whitelist_tags WHITELIST_TAGS]
102+
{create-dataset,delete-dataset,get-dataset,list-datasets,patch-dataset,deidentify-dataset}
103+
...
104+
105+
positional arguments:
106+
{create-dataset,delete-dataset,get-dataset,list-datasets,patch-dataset,deidentify-dataset}
107+
create-dataset Creates a dataset.
108+
delete-dataset Deletes a dataset.
109+
get-dataset Gets any metadata associated with a dataset.
110+
list-datasets Lists the datasets in the project.
111+
patch-dataset Updates dataset metadata.
112+
deidentify-dataset Creates a new dataset containing de-identified data
113+
from the source dataset.
114+
115+
optional arguments:
116+
-h, --help show this help message and exit
117+
--service_account_json SERVICE_ACCOUNT_JSON
118+
Path to service account JSON file.
119+
--api_key API_KEY Your API key.
120+
--project_id PROJECT_ID
121+
GCP project name
122+
--cloud_region CLOUD_REGION
123+
GCP cloud region
124+
--dataset_id DATASET_ID
125+
Name of dataset
126+
--time_zone TIME_ZONE
127+
The default timezone used by a dataset
128+
--destination_dataset_id DESTINATION_DATASET_ID
129+
The name of the new dataset where the de-identified
130+
data will be written
131+
--whitelist_tags WHITELIST_TAGS
132+
The data to whitelist, for example "PatientID" or
133+
"StudyInstanceUID"
134+
135+
136+
137+
138+
139+
The client library
140+
-------------------------------------------------------------------------------
141+
142+
This sample uses the `Google Cloud Client Library for Python`_.
143+
You can read the documentation for more details on API usage and use GitHub
144+
to `browse the source`_ and `report issues`_.
145+
146+
.. _Google Cloud Client Library for Python:
147+
https://googlecloudplatform.github.io/google-cloud-python/
148+
.. _browse the source:
149+
https://github.com/GoogleCloudPlatform/google-cloud-python
150+
.. _report issues:
151+
https://github.com/GoogleCloudPlatform/google-cloud-python/issues
152+
153+
154+
.. _Google Cloud SDK: https://cloud.google.com/sdk/

‎healthcare/api-client/datasets/README.rst.in

Lines changed: 29 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,29 @@
1+
# This file is used to generate README.rst
2+
3+
product:
4+
name: Cloud Healthcare API
5+
short_name: Healthcare API
6+
url: https://cloud.google.com/healthcare/docs
7+
description: >
8+
`Cloud Healthcare API`_ implements healthcare-native protocols and formats
9+
to accelerate ingestion, storage, analysis, and integration of healthcare
10+
data with cloud-based applications.
11+
12+
- See the `migration guide`_ for information about migrating to Python client library v0.25.1.
13+
14+
15+
.. _migration guide: https://cloud.google.com/vision/docs/python-client-migration
16+
17+
setup:
18+
- auth
19+
- auth_api_key
20+
- install_deps
21+
22+
samples:
23+
- name: Datasets
24+
file: datasets.py
25+
show_help: True
26+
27+
cloud_client_library: true
28+
29+
folder: healthcare/api-client/datasets

0 commit comments

Comments
 (0)