Program for comparing trends and applications of two search terms in Bioinformatics domain. Generates 6 png files (8 plots) and 2 xlsx files containing keywords related to specified search terms.
python3 src/pubmed.py
or
python src/pubmed.py
| Name | Default value | Description |
|---|---|---|
| ENTREZ_EMAIL | '[email protected]' | your email (used to query Entrez) |
| SEARCH_TERM_1 | 'deep learning' | first term to query Entrez for |
| MAX_RETURNED_TERM_1 | 30 | maximum amount of returned records for first term |
| SEARCH_TERM_2 | 'artificial intelligence' | second term to query Entrez for |
| MAX_RETURNED_TERM_2 | 60 | maximum amount of returned records for second term |
| OUTPUT_PATH | 'output' | path to store .png plots and .xlxs keywords files in |
Tip: add [MeSH Terms] to the end of the term to have Entrez find aliases for term and search for those as well - i.e. 'artificial intelligence[MeSH Terms]')