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1. EGFR-Binder-Design EGFR-Binder-Design Public

   Comprehensive pipeline for EGFR binder design using RFdiffusion, ProteinMPNN, AlphaFold2, ESM2, and BioNeMo, with Docker support for reproducibility.

   Python 3

2. MDStrainMapper MDStrainMapper Public

   MDStrainMapper is a comprehensive tool designed to study local deformation in proteins. It provides an effective measure of strain, which captures local deformation relevant to protein function.

   Python

3. code-samples code-samples Public

   Forked from dr-kinder/code-samples

   Code samples for "A Student's Guide to Python for Physical Modeling"

   Python

4. ER_scripts ER_scripts Public

   Forked from ShayanBordbar/ER_scripts

   This repository contains scripts used in analysis of this paper: Integrative analysis of Estrogen Receptor mediated transcriptional program in breast cancer

   R

5. esm esm Public

   Forked from facebookresearch/esm

   Evolutionary Scale Modeling (esm): Pretrained language models for proteins

   Python

6. ESMfluc ESMfluc Public

   Python