Description

I opened a file the way I normally would (via advanced-open-file, in a repository that contains unstaged changes. Those changes show up in the Git pane, but when trying to click anywhere in the Git (or Github) pane, the file looses focus and the Git pane displays the "Initialize a new project..." text it shows when you are not in a git repo.

Steps to Reproduce

1. Open Atom
2. Open a file in a git repo via advanced-open-file
3. Click inside the Git pane

Expected behavior:

I expected to be able to interact with the contents of the Git pane.

Actual behavior:

The content in the git pane vanishes when I click inside it. When I click into the pane of the file again, the content reapears (this can be repeated infinitely).

Reproduces how often:

With the steps above 100% of the time. During debugging I noticed that it doesn't happen if I open the file via the standard "Open..." dialog, which I wouldn't do in my normal workflow. Couldn't reproduce in safe mode since advanced-open-file wasn't present.

Versions

atom-beta --version:

Atom    : 1.18.0-beta0
Electron: 1.3.15
Chrome  : 52.0.2743.82
Node    : 6.5.0

apm-beta --version:

apm  1.18.1
npm  3.10.10
node 6.9.5 x64
python 2.7.10
git 2.10.1

OS: macOS X 10.12.4