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Commits on Feb 12, 2009

• Using the actual xtra data keys introduced in Bio/PDB/HSExposure.py revision 1.16 (Biopython 1.41) for the CA exposure data. Problem reported on the mailing list

  

  peterc

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Commits on Jan 15, 2009

• Removed some unused imports, use string methods instead of string module. Note the BLAST stuff doesn't seem to work for me, perhaps due to the version of Pmw (Python megawidgets)?.

  

  peterc

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• Fix the Translation/Extract to FASTA menu item (propably a side effect of my recent Translation change)

  

  peterc

  committed
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• Updates to use Bio.Seq and Bio.SeqUtils instead of removed Bio.sequtils and obsolete Bio.Translate modules

  

  peterc

  committed
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• Bio.sequtils was deprecated and then removed in Biopython 1.42, use Bio.SeqUtils instead

  

  peterc

  committed
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Commits on Oct 30, 2008

• Removing some unused imports, especially for the obsolete regsub

  

  peterc

  committed
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Commits on Aug 5, 2008

• Bringing this script up to date (more or less).

  

  mdehoon

  committed
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Commits on Jul 13, 2007

• =Standardising shebang lines, see bug 2269

  

  peterc

  committed
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Commits on Jun 22, 2005

• Updated to new DSSP, ResdueDepth and HSExposure classes

  

  nisse

  committed
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Commits on Aug 13, 2004

• Added Restriction enzyme package contributed by Frederic Sohm. This includes classes for manipulating enzymes, updating from Rebase, as well as documentation and Tests.

  

  chapmanb

  committed
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Commits on Jun 29, 2004

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  nisse

  committed
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Commits on Jun 24, 2004

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  nisse

  committed
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  nisse

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Commits on Jun 18, 2004

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  nisse

  committed
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• Prints help when called as hsexpo

  

  nisse

  committed
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Commits on May 26, 2004

• Fixed bug in FS. Added DSSPa & DSSPr

  

  nisse

  committed
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Commits on May 13, 2004

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  nisse

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  nisse

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  nisse

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• A program to calculate residue solvent exposure (in 5 different ways)

  

  nisse

  committed
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Commits on May 4, 2004

• Updated import

  

  nisse

  committed
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Commits on Sep 7, 2003

• committed Guido Draheim's patches for fixing the import paths

  

  jchang

  committed
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Commits on Sep 4, 2003

• added Peter Slickers' patch to change apply() to extended call syntax.

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  jchang

  committed
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Commits on Jun 21, 2003

• checked in code cleanup and updates by Andreas Kuntzagk

  

  jchang

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Commits on Sep 22, 2002

• updated dbdefs definitions

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  jchang

  committed
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• fixed a minor typo

  

  jchang

  committed
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• fixed NCBI format changes for NCBIWWW

  

  jchang

  committed
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Commits on Aug 11, 2002

• updated to reflect Bio reorg

  

  jchang

  committed
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Commits on May 29, 2002

• created a script that will help diagnose problems with the BLAST

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  jchang

  committed
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Commits on Mar 1, 2002

• Added biocorba performance testing code

  

  chapmanb

  committed
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• Added scripts used for testing and examples; Indexing files, Registry, and Performance stuff

  

  chapmanb

  committed
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Commits on Feb 22, 2002

• Added new Genetic Algorithm crossover code contributed by Dan Vogel.

  

  chapmanb

  committed
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Commits on Dec 14, 2001

• Added generic Application framework, Commandline for Blast and Emboss primer related programs.

  

  chapmanb

  committed
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Commits on Nov 8, 2001

• Extract a SCOP domain's ATOM and HETATOM records from the relevant PDB file.

  

  gec

  committed
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Commits on Nov 7, 2001

• Added GenBank scripts helpful in debugging the parser.

  

  chapmanb

  committed
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