After cloning this repository, ensure that you have a Python3 installation, and then run the following:

python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
pip install -e .

On windows: First make sure python 3 is installed and in your path

python -m venv venv
cd <wherever your virtual environment is>
Scripts\activate.bat
pip install -r requirements.txt
pip install -e .

The main function can then be run with

python manage.py runserver

To run the test suite using pytest

python manage.py test

To verify code style using pylint

pylint --load-plugins pylint_django europepmc

To contribute to this repository, please refer to CONTRIBUTING.md.

2020-03-13

• This code was deployed on Azure using the information available at https://docs.microsoft.com/en-us/azure/app-service/containers/quickstart-python?toc=%2Fazure%2Fpython%2Ftoc.json&bc=%2Fazure%2Fpython%2Fbreadcrumb%2Ftoc.json&tabs=bash
• The command is az webapp up --sku F1 -n atlas-publications -l uksouth --subscription SV-ADAC-Biobanking-UK