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@brineylab

brineylab

Briney Lab @ Scripps Research

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  1. abstar abstar Public

    VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.

    Pkl 44 16

  2. abutils abutils Public

    Python 7 4

  3. scab scab Public

    Python 4 3

  4. BALM BALM Public

    BALM: baseline antibody language model

    Python 1

  5. grp-paper grp-paper Public

    Code and data used in The Great Repertoire Project

    Jupyter Notebook 29 11

  6. BALM-paper BALM-paper Public

    Jupyter Notebook 17 5

Repositories

Showing 10 of 29 repositories
  • GraphRelax Public Forked from delalamo/GraphRelax

    A drop-in replacement for Rosetta Relax

    brineylab/GraphRelax’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Jan 30, 2026
  • deepspeed Public
    brineylab/deepspeed’s past year of commit activity
    Python 0 1 0 0 Updated Jan 30, 2026
  • clonify Public
    brineylab/clonify’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 25, 2026
  • abutils Public
    brineylab/abutils’s past year of commit activity
    Python 7 MIT 4 0 1 Updated Jan 24, 2026
  • ssrmsd Public

    Unified pipeline for extracting, converting, and analyzing AF3 antibody structures.

    brineylab/ssrmsd’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 23, 2026
  • pairplex Public
    brineylab/pairplex’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 20, 2026
  • abstar Public

    VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.

    brineylab/abstar’s past year of commit activity
    Pkl 44 MIT 16 5 1 Updated Jan 16, 2026
  • fold-webapp Public
    brineylab/fold-webapp’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 20, 2025
  • preferential-masking-paper Public
    brineylab/preferential-masking-paper’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 10, 2025
  • BALM-paper Public
    brineylab/BALM-paper’s past year of commit activity
    Jupyter Notebook 17 MIT 5 1 0 Updated Dec 10, 2025
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