Merge pull request #13 from cfe-lab/ReformatBBLabAlleles #42
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| name: test | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| concurrency: | |
| group: test-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| env: | |
| PYTHONUNBUFFERED: "1" | |
| FORCE_COLOR: "1" | |
| jobs: | |
| run: | |
| name: Python ${{ matrix.python-version }} Tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10", "3.11", "3.12", "3.x"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| apt update && apt install yamllint | |
| pip install uv | |
| - name: Check code | |
| continue-on-error: true | |
| run: | | |
| yamllint . | |
| uv run mypy --check . | |
| uv run ruff check . | |
| - name: Run tests | |
| run: uv run pytest --junitxml=pytest.xml | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # - name: Publish Test Report | |
| # uses: mikepenz/action-junit-report@v5 | |
| # if: success() || failure() | |
| # with: | |
| # report_paths: pytest.xml | |
| - name: Upload test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |