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dna-tools

DNA Tools that work on AncestryDNA/Promethease files.

Instructions

DNA data

This directory is currently ignored from Git so you can put working files there and they will not be committed.

I recommend unzipping the DNA file downloaded from your site (in my case AncestryDNA.com) and moving the AncestryDNA.txt file to something like "dna/damon.dna". The tools in the bin directory will expect a file in this format:

#AncestryDNA raw data download
#This file was generated by AncestryDNA at: 06/10/2018 23:03:29 UTC
#Data was collected using AncestryDNA array version: V2.0
#Data is formatted using AncestryDNA converter version: V1.0
#Below is a text version of your DNA file from Ancestry.com DNA, LLC.  THIS 
#INFORMATION IS FOR YOUR PERSONAL USE AND IS INTENDED FOR GENEALOGICAL RESEARCH 
#ONLY.  IT IS NOT INTENDED FOR MEDICAL, DIAGNOSTIC, OR HEALTH PURPOSES.  THE EXPORTED DATA IS 
#SUBJECT TO THE AncestryDNA TERMS AND CONDITIONS, BUT PLEASE BE AWARE THAT THE 
#DOWNLOADED DATA WILL NO LONGER BE PROTECTED BY OUR SECURITY MEASURES.
#WHEN YOU DOWNLOAD YOUR RAW DNA DATA, YOU ASSUME ALL RISK OF STORING, 
#SECURING AND PROTECTING YOUR DATA.  FOR MORE INFORMATION, SEE ANCESTRYDNA FAQS. 
#
#Genetic data is provided below as five TAB delimited columns.  Each line 
#corresponds to a SNP.  Column one provides the SNP identifier (rsID where 
#possible).  Columns two and three contain the chromosome and basepair position 
#of the SNP using human reference build 37.1 coordinates.  Columns four and five 
#contain the two alleles observed at this SNP (genotype).  The genotype is reported 
#on the forward (+) strand with respect to the human reference.
rsid	chromosome	position	allele1	allele2
rs4692020	1	2693	G	G
rs7994761	1	3694	T	T
...

Installing Promethease files

Copy your promethease files into the promethease directory.

You should have a promethease/promethease.html file.

Reference

Good reference on DNA notation

https://www.mygenefood.com/the-language-of-genetics/

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DNA Tools that work on AncestryDNA/Prometheuse files.

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