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Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.

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glennhickey/toil

 
 

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Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby

Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming.

  • Check the website for a description of Toil and its features.
  • Full documentation for the latest stable release can be found at Read the Docs.
  • Please subscribe to low-volume announce mailing list so we keep you informed
  • Google Groups discussion forum
  • See our occasional blog for tutorials.
  • Use biostars channel for discussion.

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Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.

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  • Python 98.1%
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