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1. Plasmid_ST_Permutation_Test Plasmid_ST_Permutation_Test Public

   Permutation test for plasmid horizontal transfer, defined as likelihood of encountering the same plasmid across different STs within a single colonized patient

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2. indiv_abxduration indiv_abxduration Public

   modelling day project on abx duration (individual model)

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3. AHC-ML-shinyapp AHC-ML-shinyapp Public

   Code for companion shinyapp to "Using machine learning to guide targeted and locally-tailored empiric antibiotic prescribing in a children's hospital in Cambodia"

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