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  1. Optimization_Methods_in_Metabolic_Networks Optimization_Methods_in_Metabolic_Networks Public

    Examples for Optimization Methods in Metabolic Networks (ISBN: 978-1-119-02849-9)

    GAMS 7 1

  2. SteadyState-MFA SteadyState-MFA Public

    Genome scale steady state 13C metabolic flux analysis

    MATLAB 4 4

  3. Nonstationary-MFA Nonstationary-MFA Public

    Genome-scale nonstationary 13C metabolic flux analysis

    MATLAB 1

  4. CatPred CatPred Public

    Machine Learning models for in vitro enzyme kinetic parameter prediction

    Python 56 16

  5. novoStoic2.0 novoStoic2.0 Public

    novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection

    Jupyter Notebook 9 9

  6. KETCHUP KETCHUP Public

    Kinetic Estimation Tool Capturing Heterogeneous Datasets Using Pyomo (KETCHUP)

    Python 2 1

Repositories

Showing 10 of 46 repositories
  • yeastsMFA Public

    Repository for yeasts MFA related files

    maranasgroup/yeastsMFA’s past year of commit activity
    MATLAB 2 1 0 0 Updated Sep 15, 2025
  • MechFind Public
    maranasgroup/MechFind’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 8, 2025
  • chemo-enz Public

    Expanding chemical synthesis planning to explore chemo-enzymatic pathways using minimal transitions

    maranasgroup/chemo-enz’s past year of commit activity
    Jupyter Notebook 1 0 1 0 Updated Aug 14, 2025
  • rtRBA Public

    Resource Balance Analysis model for Rhodotorula toruloides IFO0880

    maranasgroup/rtRBA’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 13, 2025
  • KETCHUP Public

    Kinetic Estimation Tool Capturing Heterogeneous Datasets Using Pyomo (KETCHUP)

    maranasgroup/KETCHUP’s past year of commit activity
    Python 2 1 1 0 Updated Jul 31, 2025
  • iPavir Public

    Genome-scale metabolic model of Panicum virgatum

    maranasgroup/iPavir’s past year of commit activity
    0 MIT 0 0 0 Updated May 27, 2025
  • ctRBA Public

    Repository for genome-scale resource balance analysis model of Clostridium thermocellum, ctRBA

    maranasgroup/ctRBA’s past year of commit activity
    HTML 0 0 0 0 Updated May 14, 2025
  • novoStoic2.0 Public

    novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection

    maranasgroup/novoStoic2.0’s past year of commit activity
    Jupyter Notebook 9 9 0 0 Updated Apr 28, 2025
  • CatPred Public

    Machine Learning models for in vitro enzyme kinetic parameter prediction

    maranasgroup/CatPred’s past year of commit activity
    Python 56 MIT 16 8 1 Updated Apr 10, 2025
  • Protein-InDelMaker Public

    A Rosetta-based Python tool for constructing user-defined variant libraries with amino acid insertions, deletions, using loop closure algorithms and energy minimization.

    maranasgroup/Protein-InDelMaker’s past year of commit activity
    Python 3 1 0 0 Updated Jan 17, 2025
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