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Minor AmpIllumina pipeline GL-DPPD-7104-C updates to sync with NF_AmpIllumina 1.0.3

  • Add zipped files
  • Report rarefaction_depth used
  • Add assay_suffix where needed
  • sync alpha/beta diversity code

…, assay_suffix where needed; sync alpha/beta diversity code
…add tech_type, add assay_suffix to fastq files
@bnovak32 bnovak32 merged commit 889241f into nasa:DEV_NFAmpIllumina_1.0.3_patch Sep 30, 2025
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