Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Conversation

@psadil
Copy link
Contributor

@psadil psadil commented Oct 2, 2024

Closes #461

The chosen radius (5 voxels) is a bit of a guess based on what has worked in the dataset where I was noticing failures. Input on a more systematic way to select this would be welcome.

@psadil
Copy link
Contributor Author

psadil commented Oct 2, 2024

Sorry, but it's not clear to me why that test is failing. I guess it's this doctest?

>>> find_estimators(
... layout=layouts['ds000054'],
... subject="100185",
... fmapless=False,
... ) # doctest: +ELLIPSIS
[FieldmapEstimation(sources=<3 files>, method=<EstimatorType.PHASEDIFF: 3>,
bids_id='auto_00000')]

@effigies
Copy link
Member

effigies commented Oct 2, 2024

Ah, it's global state and parallel tests interacting poorly. I'll figure out what's needed to isolate the state better.

@effigies effigies force-pushed the enh/dilate-mask-for-coregister branch from 183a74f to 85e0197 Compare October 3, 2024 14:42
@codecov
Copy link

codecov bot commented Oct 3, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 83.68%. Comparing base (18e5e95) to head (85e0197).
Report is 2 commits behind head on master.

Additional details and impacted files
@@            Coverage Diff             @@
##           master     #463      +/-   ##
==========================================
+ Coverage   83.66%   83.68%   +0.01%     
==========================================
  Files          32       32              
  Lines        2816     2819       +3     
  Branches      377      377              
==========================================
+ Hits         2356     2359       +3     
  Misses        390      390              
  Partials       70       70              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@effigies effigies merged commit d953979 into nipreps:master Oct 3, 2024
13 checks passed
@psadil psadil deleted the enh/dilate-mask-for-coregister branch October 3, 2024 15:44
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Dilate fmap and epi masks before coregistration

2 participants