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BUG: fix choose refcount leak #24328

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Merged
merged 6 commits into from
Aug 3, 2023
Merged

BUG: fix choose refcount leak #24328

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ec9c025
BUG: fix choose refcount leak
tylerjereddy Jul 15, 2023
6e41cd6
BUG: PR 24188 revisions
tylerjereddy Jul 18, 2023
fbf8dbc
MAINT: PR 24188 revisions
tylerjereddy Jul 25, 2023
e4b880e
MAINT: Use explicit copy path in choose based on refcheck
seberg Jul 31, 2023
1c22bf7
BUG: Remove unnecessary (and now also segfaulting) iterator creation
seberg Jul 31, 2023
87a93ef
ENH: Use `memcpy` and swap order
seberg Jul 31, 2023
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35 changes: 30 additions & 5 deletions numpy/core/src/multiarray/item_selection.c
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Original file line number Diff line number Diff line change
Expand Up @@ -993,9 +993,10 @@ PyArray_Choose(PyArrayObject *ip, PyObject *op, PyArrayObject *out,
if (multi == NULL) {
goto fail;
}
dtype = PyArray_DESCR(mps[0]);

/* Set-up return array */
if (out == NULL) {
dtype = PyArray_DESCR(mps[0]);
Py_INCREF(dtype);
obj = (PyArrayObject *)PyArray_NewFromDescr(Py_TYPE(ap),
dtype,
Expand Down Expand Up @@ -1032,16 +1033,29 @@ PyArray_Choose(PyArrayObject *ip, PyObject *op, PyArrayObject *out,
*/
flags |= NPY_ARRAY_ENSURECOPY;
}
dtype = PyArray_DESCR(mps[0]);
Py_INCREF(dtype);
obj = (PyArrayObject *)PyArray_FromArray(out, dtype, flags);
}

if (obj == NULL) {
goto fail;
}
elsize = PyArray_DESCR(obj)->elsize;
elsize = dtype->elsize;
ret_data = PyArray_DATA(obj);
npy_intp transfer_strides[2] = {elsize, elsize};
npy_intp one = 1;
NPY_ARRAYMETHOD_FLAGS transfer_flags = 0;
NPY_cast_info cast_info = {.func = NULL};
if (PyDataType_REFCHK(dtype)) {
int is_aligned = IsUintAligned(obj);
PyArray_GetDTypeTransferFunction(
is_aligned,
dtype->elsize,
dtype->elsize,
dtype,
dtype, 0, &cast_info,
&transfer_flags);
}

while (PyArray_MultiIter_NOTDONE(multi)) {
mi = *((npy_intp *)PyArray_MultiIter_DATA(multi, n));
Expand Down Expand Up @@ -1074,12 +1088,22 @@ PyArray_Choose(PyArrayObject *ip, PyObject *op, PyArrayObject *out,
break;
}
}
memmove(ret_data, PyArray_MultiIter_DATA(multi, mi), elsize);
if (cast_info.func == NULL) {
/* We ensure memory doesn't overlap, so can use memcpy */
memcpy(ret_data, PyArray_MultiIter_DATA(multi, mi), elsize);
}
else {
char *args[2] = {PyArray_MultiIter_DATA(multi, mi), ret_data};
if (cast_info.func(&cast_info.context, args, &one,
transfer_strides, cast_info.auxdata) < 0) {
goto fail;
}
}
ret_data += elsize;
PyArray_MultiIter_NEXT(multi);
}

PyArray_INCREF(obj);
NPY_cast_info_xfree(&cast_info);
Py_DECREF(multi);
for (i = 0; i < n; i++) {
Py_XDECREF(mps[i]);
Expand All @@ -1095,6 +1119,7 @@ PyArray_Choose(PyArrayObject *ip, PyObject *op, PyArrayObject *out,
return (PyObject *)obj;

fail:
NPY_cast_info_xfree(&cast_info);
Py_XDECREF(multi);
for (i = 0; i < n; i++) {
Py_XDECREF(mps[i]);
Expand Down
11 changes: 11 additions & 0 deletions numpy/core/tests/test_multiarray.py
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Original file line number Diff line number Diff line change
Expand Up @@ -10031,3 +10031,14 @@ def test_argsort_int(N, dtype):
arr = rnd.randint(low=minv, high=maxv, size=N, dtype=dtype)
arr[N-1] = maxv
assert_arg_sorted(arr, np.argsort(arr, kind='quick'))


@pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts")
def test_gh_22683():
b = 777.68760986
a = np.array([b] * 10000, dtype=object)
refc_start = sys.getrefcount(b)
np.choose(np.zeros(10000, dtype=int), [a], out=a)
np.choose(np.zeros(10000, dtype=int), [a], out=a)
refc_end = sys.getrefcount(b)
assert refc_end - refc_start < 10