Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Conversation

imallona
Copy link
Member

@imallona imallona commented Sep 3, 2025

To be browsed at https://github.com/omnibenchmark/clustering_example/actions/workflows/benchmark.yml

Mind this runs the whole/large benchmark, and on 'omnibenchmark dev', so perhaps worth reducing its scope by adding a tiny_custering_conda.yml

@imallona
Copy link
Member Author

imallona commented Sep 3, 2025

Broken due to pulp / scheduling snakemake/snakemake#3719

@imallona
Copy link
Member Author

imallona commented Sep 3, 2025

Updated the ob run benchmark call to parse the extra --scheduler greedy arg omnibenchmark/run_omnibenchmark@8f9f1c9 (as it was default in older snakemake versions, which ran clustbench fine), but now I get 2-4x logging running clustbench (?)

@DanInci
Copy link
Contributor

DanInci commented Sep 11, 2025

I believe this is no longer relevant @imallona ?

@imallona
Copy link
Member Author

imallona commented Sep 11, 2025

Let me check whether clustbench runs without the greedy sched...

@imallona
Copy link
Member Author

imallona commented Sep 11, 2025

ah snmk fixed it yesterday http s://github.com/snakemake/snakemake/issues/3719

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants