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@phnmnl PhenoMeNal

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    153 repositories

    • phenomenal-h2020

      Public archive
      Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project
      6•22•31•0•Updated Mar 28, 2025Mar 28, 2025

    • container-pwiz

      Public archive
      The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that facilitate proteomics data analysis, developed by the Proteowizard Team at http://proteowizard.sourceforge.net/. This repository contains the Docker image to convert from many vendor raw data formats to mzML via Li…
      HTML
      •8•22•5•0•Updated Aug 25, 2023Aug 25, 2023

    • ng2-phenomenal-portal

      Public archive
      PhenoMeNal Cloud Research Environment
      TypeScript
      •2•1•9•26•Updated Jan 3, 2023Jan 3, 2023

    • cloud-deploy-kubenow-cerebellin-20190625

      Public archive
      Shell
      •
      Apache License 2.0
      •0•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • cloud-deploy-kubenow-dalcotidine-20190625

      Public archive
      Shell
      •
      Apache License 2.0
      •0•0•0•8•Updated Dec 8, 2022Dec 8, 2022

    • cloud-deploy-kubenow-cerebellin-20180523

      Public archive
      cloud-deploy-kubenow-cerebellin with a new name
      Shell
      •
      Apache License 2.0
      •0•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • cloud-deploy-kubenow-cerebellin-20181206

      Public archive
      Shell
      •
      Apache License 2.0
      •0•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • cloud-deploy-kubenow-dalcotidine-20181206

      Public archive
      Shell
      •
      Apache License 2.0
      •0•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • cloud-deploy-kubenow

      Public archive
      This repository contains scripts to manage the PhenoMeNal cloud CRE.
      Shell
      •
      Apache License 2.0
      •6•1•4•6•Updated Dec 8, 2022Dec 8, 2022

    • cloud-deploy-kubenow-dalcotidine

      Public archive
      Cloud deploy kubenow fork for Dalcotidine release - A separate clone is needed instead of just a branch due to the inability of the TSI Portal backend to work against a different branch than master:(
      Shell
      •
      Apache License 2.0
      •1•1•0•6•Updated Dec 8, 2022Dec 8, 2022

    • cloud-deploy-kubenow-cerebellin

      Public archive
      Cloud deploy kubenow snapshot for Cerebellin
      Shell
      •
      Apache License 2.0
      •2•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • docker-compassxport

      Public archive
      Dockerfile
      •
      Apache License 2.0
      •3•3•1•0•Updated Sep 19, 2022Sep 19, 2022

    • container-nmr-integrals

      Public archive
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 25, 2021May 25, 2021

    • KubeNow

      Public archive
      Deploy Kubernetes. Now!
      HCL
      •
      Apache License 2.0
      •38•0•0•0•Updated May 1, 2020May 1, 2020

    • helm-charts

      Public archive
      PhenoMeNal Helm Charts
      Smarty
      •5•2•0•1•Updated Apr 21, 2020Apr 21, 2020

    • KubeNow-plugin

      Public archive
      PhenoMeNal deployment as a plugin for KubeNow
      Shell
      •2•4•8•0•Updated Jan 11, 2020Jan 11, 2020

    • tutorial_utils

      Public archive
      Utility scripts for PhenoMeNal tutorials and practical sessions
      Python
      •0•0•2•0•Updated Oct 21, 2019Oct 21, 2019

    • container-xcms

      Public archive
      Container for xcms + various R scripts
      R
      •
      MIT License
      •6•1•0•0•Updated Aug 27, 2019Aug 27, 2019

    • container-msnbase

      Public archive
      Basic plotting, data manipulation and processing of MS-based Proteomics data.
      R
      •4•0•0•0•Updated Aug 14, 2019Aug 14, 2019

    • container-phenomenal-portal

      Public archive
      Dockerfile
      •1•2•4•0•Updated Jul 4, 2019Jul 4, 2019

    • container-galaxy-k8s-runtime

      Public archive
      PhenoMeNal runtime for Galaxy running inside a container orchestrator
      JavaScript
      •
      Apache License 2.0
      •18•6•17•4•Updated Jul 3, 2019Jul 3, 2019

    • container-cfmid

      Public archive
      R
      •2•0•0•0•Updated Jun 18, 2019Jun 18, 2019

    • container-csifingerid

      Public archive
      MAXScript
      •1•0•0•0•Updated Jun 7, 2019Jun 7, 2019

    • container-tamenmr

      Public archive
      Repository of tameNMR
      Shell
      •
      Apache License 2.0
      •0•0•2•1•Updated May 13, 2019May 13, 2019

    • bioc_docker

      Public archive
      Docker containers for Bioconductor
      R
      •
      Artistic License 2.0
      •25•0•0•0•Updated Apr 3, 2019Apr 3, 2019

    • galaxy

      Public archive
      Data intensive science for everyone.
      Python
      •
      Other
      •1.1k•3•3•1•Updated Feb 20, 2019Feb 20, 2019

    • php-phenomenal-portal-wiki

      Public archive
      PHP
      •1•0•1•0•Updated Jan 17, 2019Jan 17, 2019

    • container-portal-metadata-backend

      Public archive
      Container for the PhenoMeNal portal metadata backend
      Shell
      •1•0•0•0•Updated Dec 20, 2018Dec 20, 2018

    • portal-metadata-backend

      Public archive
      PHP
      •1•0•0•0•Updated Dec 20, 2018Dec 20, 2018

    • bioconda-recipes

      Public archive
      Conda recipes for the bioconda channel.
      Shell
      •3.7k•0•0•0•Updated Dec 17, 2018Dec 17, 2018