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Support weighted clustering #11

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Merged
merged 5 commits into from
Jun 2, 2022
Merged

Support weighted clustering #11

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7a7144c
Support weighted clustering
eriknw May 23, 2022
a81498f
Add square_clustering! Also, upgrade style to latest python-graphblas
eriknw May 28, 2022
6eff76f
Add generalized_degree
eriknw May 29, 2022
d2865e5
Install networkx from git
eriknw May 30, 2022
322ac40
to_networkx
eriknw Jun 1, 2022
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10 changes: 6 additions & 4 deletions .github/workflows/test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -30,16 +30,18 @@ jobs:
activate-environment: testing
- name: Install dependencies
run: |
conda install -c conda-forge python-graphblas networkx scipy \
pytest coverage black flake8 flake8-comprehensions flake8-bugbear
pip install -e .
conda install -c conda-forge python-graphblas scipy pandas \
pytest-cov pytest-randomly black flake8-comprehensions flake8-bugbear
# matplotlib lxml pygraphviz pydot sympy # Extra networkx deps we don't need yet
pip install git+https://github.com/networkx/networkx.git@main --no-deps
pip install -e . --no-deps
- name: Style checks
run: |
flake8
black . --check --diff
- name: PyTest
run: |
coverage run --branch -m pytest
coverage run --branch -m pytest -v
coverage xml
- name: Coverage
uses: codecov/codecov-action@v2
6 changes: 3 additions & 3 deletions graphblas_algorithms/algorithms/__init__.py
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@@ -1,3 +1,3 @@
from .cluster import average_clustering, clustering, transitivity, triangles
from .link_analysis import pagerank
from .reciprocity import overall_reciprocity, reciprocity
from .cluster import *
from .link_analysis import *
from .reciprocity import *
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