Codestin Search App

minouHub · 2026-04-19T20:11:43Z

Spring 2026 🐣

Details in #994

⚙️Compatibility with Python 3.13 and automatic deployement

Compatibility with Python 3.13 + install vaex-hdf5 from pip by @minouHub in Compatibility with Python 3.13 + install vaex-hdf5 from pip #988
fix: convert README from RST to Markdown and fix PyPI deployment by @tanishadahale in fix: convert README from RST to Markdown and fix PyPI deployment #991

Full list of changes:

[CI] HITRAN credentials moved to TRAVIS by @minouHub in [CI] HITRAN credentials moved to TRAVIS #896
Added parallel CO2 chunk downloader with ThreadPoolExecutor by @merintheres in Added parallel CO2 chunk downloader with ThreadPoolExecutor #885
Add new HITRAN molecules: CH3 and H3+ by @minouHub in Add new HITRAN molecules: CH3 and H3+ #897
Update hitranapi.py by @Leberwurscht in Update hitranapi.py #886
Fix: Update non-regression test values for HITRAN2024 by @tanishadahale in Fix: Update non-regression test values for HITRAN2024 #910
Update of doc (install procedure) by @minouHub in Update of doc (install procedure) #906
Refactor: Remove parfuncfmt by @Omiii-215 in Refactor: Remove parfuncfmt #903
Standardize database progress output across all APIs by @tanishadahale in Standardize database progress output across all APIs #899
Fix/geisa missing branch by @PavanendraBaahubali in Fix/geisa missing branch #890
Modernize DeprecationWarning usage for cached parameters by @ashrinc in Modernize DeprecationWarning usage for cached parameters #920
Add automatic residual plotting to SpecDatabase.fit_spectrum by @tanishadahale in Add automatic residual plotting to SpecDatabase.fit_spectrum #907
Fix inconsistent spectral_points reporting by @apoorvdarshan in Fix inconsistent spectral_points reporting #918
fix(phys): add validation for non-positive temperatures in planck fun… by @Zeyadzahran in fix(phys): add validation for non-positive temperatures in planck fun… #934
feat: add support for wildcards and lists in calc_spectrum(databank=...) by @tanishadahale in feat: add support for wildcards and lists in calc_spectrum(databank=...) #914
Fix inline emphasis warning in fetch_exomol docstring by @raza-khan0108 in Fix inline emphasis warning in fetch_exomol docstring #913
feat: restore codecov support (issue [CI-Tests] Coverage, acceleration, and Windows #785) by @Omiii-215 in feat: restore codecov support (issue #785) #909
Refactor: switch from os.path to pathlib (partial) by @tanishadahale in Refactor: switch from os.path to pathlib (partial) #936
perf: optimize startup time by lazy loading heavy dependencies by @Zeyadzahran in perf: optimize startup time by lazy loading heavy dependencies #941
Fix TODOs: add error/warning messages and fix bare except by @tanishadahale in Fix TODOs: add error/warning messages and fix bare except #956
Add file-like object support to spectrum.store() (fixes 🚀 Feature: Add ability to write spectrum file to a buffer instead of to disk #506) by @tanishadahale in Add file-like object support to spectrum.store() (fixes #506) #930
ci: fix Travis coverage upload to radis/radis Codecov project by @Zeyadzahran in ci: fix Travis coverage upload to radis/radis Codecov project #960
Register partial HITEMP CO2 downloads in radis.json by @merintheres in Register partial HITEMP CO2 downloads in radis.json #954
docs: remove deprecated LGTM badge and fix minor typo by @archiristo in docs: remove deprecated LGTM badge and fix minor typo #935
fix: replace all bare except: with specific exception types by @Zeyadzahran in fix: replace all bare except: with specific exception types #949
Fix LineSurvey to respect lineinfo for unknown database formats by @tanishadahale in Fix LineSurvey to respect lineinfo for unknown database formats #957
fix: replace raise DeprecationWarning with warnings.warn and NotImple… by @Zeyadzahran in fix: replace raise DeprecationWarning with warnings.warn and NotImple… #964
Fix spurious HITEMP HTTPError when HEAD returns HTML by @Flamki in Fix spurious HITEMP HTTPError when HEAD returns HTML #940
Fix temporary database downloads being written to working directory by @merintheres in Fix temporary database downloads being written to working directory #977
refactor: deprecate optically_thin parameter by @Zeyadzahran in refactor: deprecate optically_thin parameter #973
Move profiler out of conditions by @merintheres in Move profiler out of conditions #984
Compatibility with Python 3.13 + install vaex-hdf5 from pip by @minouHub in Compatibility with Python 3.13 + install vaex-hdf5 from pip #988
Fix apply_slit() returns error in co2-4080-4500 example #440: Investigate slit_dispersion issue and correct English mistake by @tanishadahale in Fix #440: Investigate slit_dispersion issue and correct English mistake #946
perf: add copy=False to spectrum.get() in compare.py by @Zeyadzahran in perf: add copy=False to spectrum.get() in compare.py #975
Add warning for out-of-range wavenumber requests by @merintheres in Add warning for out-of-range wavenumber requests #980
Add sanity checks to slit import by @minouHub in Add sanity checks to slit import #993
Increase test coverage by @Zeyadzahran in Increase test coverage #987
fix: convert README from RST to Markdown and fix PyPI deployment by @tanishadahale in fix: convert README from RST to Markdown and fix PyPI deployment #991
Fix HITRAN uncertainty column preservation for add_HITRAN_uncertainty_code Fix HITRAN uncertainty column preservation for add_HITRAN_uncertainty_code #998

New Contributors

@Leberwurscht made their first contribution in Update hitranapi.py #886
@tanishadahale made their first contribution in Fix: Update non-regression test values for HITRAN2024 #910
@Omiii-215 made their first contribution in Refactor: Remove parfuncfmt #903
@PavanendraBaahubali made their first contribution in Fix/geisa missing branch #890
@ashrinc made their first contribution in Modernize DeprecationWarning usage for cached parameters #920
@apoorvdarshan made their first contribution in Fix inconsistent spectral_points reporting #918
@Zeyadzahran made their first contribution in fix(phys): add validation for non-positive temperatures in planck fun… #934
@raza-khan0108 made their first contribution in Fix inline emphasis warning in fetch_exomol docstring #913
@archiristo made their first contribution in docs: remove deprecated LGTM badge and fix minor typo #935
@Flamki made their first contribution in Fix spurious HITEMP HTTPError when HEAD returns HTML #940

Full Changelog: 0.16.4...0.17

…n to test

[CI] HITRAN credentials moved to TRAVIS

Added parallel CO2 chunk downloader with ThreadPoolExecutor

Add new HITRAN molecules: CH3 and H3+

When downloading data from hitran, some lines at very small wavenumbers are missing. This fixes it.

Upper limit was not sufficient to account for all water lines (standard conditions) in HITRAN

Update hitranapi.py

Increase test coverage

fix: convert README from RST to Markdown and fix PyPI deployment

fix(docs): update docs for sphinx/docutils compatibility and remove b…

Remove unnecessary columns - different types in Python<=3.12 and 3.13

minouHub · 2026-04-20T22:50:42Z

@HajimeKawahara this should allow a release of 0.17 on PyPi

HajimeKawahara · 2026-04-20T22:56:26Z

@minouHub Thank you! Before the release, could I have about a or two week(s) to review it to ensure consistency with ExoJAX?

minouHub · 2026-04-21T07:37:26Z

Yes no pb. Ping me when ready

HajimeKawahara · 2026-04-29T01:18:56Z

Checklist from ExoJAX

numpy 2.0
unittests passed
database download
- ExoMol: looks OK
- HITEMP: looks OK
- HITRAN: with error option does not work
  - 1. In HITRANDatabaseManager.download_and_parse(), when add_HITRAN_uncertainty_code=True, explicitly preserve or reconstruct ierr before post_process_hitran_data() writes the cache.
  - 1. Add a hard validation after post_process_hitran_data():

  if add_HITRAN_uncertainty_code and "ierr" not in df.columns:
      raise KeyError("HITRAN uncertainty column 'ierr' was requested but not loaded")

@minouHub I find a problem on the uncertainty option in hitranapi.py and have made a PR #998 to fix it.

Fix HITRAN uncertainty column preservation for add_HITRAN_uncertainty_code The failing tests are not related to this PR and solved on develop.

HajimeKawahara

Thank you!

merintheres and others added 30 commits November 14, 2025 11:21

Added parallel CO2 chunk downloader with ThreadPoolExecutor

3b7583a

added per-chunk progress bars

db74bb6

Merge branch 'radis:develop' into fix/threaded-download

ca2139e

Enable per-chunk progress, clean up error handling

b1a008d

Added test for parallel CO₂ chunked download

47acaf6

Added explicit filename checks

9cf539b

Update test for CO₂ chunked download

7ac9184

Remove try-except block

1e9c646

added HITEMP tests to TRAVIS

404685b

moved continue-on-error

9d9aa27

removed error raised for testing purpose

7da1df7

correct indent

d122854

added doc BEFORE building project

6ee47cc

update regular publish file

a690475

renaming more explicit

b3019ff

remove plot=True for compatibility with Windows CI

c9d91fb

Cap parallel download threads using CPU count

36043b6

remove more automatic plotting and adding an additional python versio…

eb8aa58

…n to test

put back one plot

6442863

Merge pull request #896 from radis/CI_HITRAN_credentials

129a914

[CI] HITRAN credentials moved to TRAVIS

Merge branch 'radis:develop' into fix/threaded-download

a6e4c29

fix(geisa): derive branch and jl from locl

4378d48

Apply pre-commit formatting (black, isort, line endings)

c33ac90

test: add GEISA branch field tests (address review feedback)

6cfde8e

Merge pull request #885 from merintheres/fix/threaded-download

2c633bb

Added parallel CO2 chunk downloader with ThreadPoolExecutor

add new HITRAN molecules

a4f2e5d

Merge pull request #897 from radis/new_HITRAN_molecules

eaff7e5

Add new HITRAN molecules: CH3 and H3+

Update hitranapi.py

e9a0152

When downloading data from hitran, some lines at very small wavenumbers are missing. This fixes it.

Update hitranapi.py

9a46225

Upper limit was not sufficient to account for all water lines (standard conditions) in HITRAN

Merge pull request #886 from Leberwurscht/develop

c9c4baf

Update hitranapi.py

minouHub added 5 commits April 19, 2026 19:47

removing deprecated file

cc65f58

Merge pull request #987 from Zeyadzahran/increase-test-coverage

c8df3e0

Increase test coverage

Merge pull request #991 from tanishadahale/fix-pypi-deployment

499b4cb

fix: convert README from RST to Markdown and fix PyPI deployment

0.16.4 --> 0.17

cf885bf

Merge remote-tracking branch 'origin/develop' into develop

d7948db

minouHub added this to the 0.17 milestone Apr 19, 2026

minouHub added 2 commits April 19, 2026 22:13

minor change to doc index

34d7ee4

remove columns of different type in Python3.13

ce2a800

minouHub mentioned this pull request Apr 20, 2026

Remove unnecessary columns - different types in Python<=3.12 and 3.13 #995

Merged

minouHub added 5 commits April 20, 2026 15:00

better handling of columns

6642295

remove axis=1 for vaex

0ddc70a

remove unnecessary reference

e457a8d

Merge pull request #992 from tanishadahale/fix/doc-build-warnings

06ebf19

fix(docs): update docs for sphinx/docutils compatibility and remove b…

Merge pull request #995 from radis/parsing_py313

cfd00eb

Remove unnecessary columns - different types in Python<=3.12 and 3.13

minouHub requested a review from HajimeKawahara April 20, 2026 22:50

minouHub mentioned this pull request Apr 22, 2026

test: optimize test_eq_vs_noneq_isotope to use local offline database #986

Closed

fixed ierr bug

65ab2ea

HajimeKawahara mentioned this pull request Apr 29, 2026

Fix HITRAN uncertainty column preservation for add_HITRAN_uncertainty_code #998

Merged

minouHub added 2 commits May 3, 2026 17:08

attempt to add libstdcxx-ng to resolve Vulkan fail

251b937

Merge pull request #998 from radis/uncertainity_hitran

10a6b5b

Fix HITRAN uncertainty column preservation for add_HITRAN_uncertainty_code The failing tests are not related to this PR and solved on develop.

HajimeKawahara approved these changes May 4, 2026

View reviewed changes

minouHub merged commit 7344967 into master May 4, 2026
20 checks passed

minouHub deployed to testPypi-deploy May 4, 2026 13:44 — with GitHub Actions View deployment

minouHub had a problem deploying to pypi-deploy May 4, 2026 13:44 — with GitHub Actions Failure

minouHub had a problem deploying to pypi-deploy May 4, 2026 13:47 — with GitHub Actions Failure

minouHub deployed to pypi-deploy May 13, 2026 21:12 — with GitHub Actions View deployment

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Release of 0.17#994

Release of 0.17#994
minouHub merged 221 commits into
masterfrom
develop

minouHub commented Apr 19, 2026 •

edited

Loading

Uh oh!

minouHub commented Apr 20, 2026

Uh oh!

HajimeKawahara commented Apr 20, 2026

Uh oh!

minouHub commented Apr 21, 2026

Uh oh!

HajimeKawahara commented Apr 29, 2026 •

edited

Loading

Uh oh!

HajimeKawahara left a comment

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

13 participants

Conversation

minouHub commented Apr 19, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Spring 2026 🐣

⚙️Compatibility with Python 3.13 and automatic deployement

Full list of changes:

New Contributors

Uh oh!

minouHub commented Apr 20, 2026

Uh oh!

HajimeKawahara commented Apr 20, 2026

Uh oh!

minouHub commented Apr 21, 2026

Uh oh!

HajimeKawahara commented Apr 29, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

HajimeKawahara left a comment

Choose a reason for hiding this comment

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

13 participants

minouHub commented Apr 19, 2026 •

edited

Loading

HajimeKawahara commented Apr 29, 2026 •

edited

Loading