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Migrate to dorado 2.0.1, escpod, and leech-default charging CI #196: Pull request #98 synchronize by jayhesselberth
1m 20s migrate/dorado-2.0.1-escpod
migrate/dorado-2.0.1-escpod
1m 20s
Migrate to dorado 2.0.1, escpod, and leech-default charging CI #195: Pull request #98 opened by jayhesselberth
1m 12s migrate/dorado-2.0.1-escpod
migrate/dorado-2.0.1-escpod
1m 12s
chore: bump leech submodule to 9537621 CI #194: Commit 403e755 pushed by jayhesselberth
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main
1m 21s
fix: warn instead of silently dropping multi-element charging tags (#97) CI #193: Commit 1497bc6 pushed by jayhesselberth
1m 17s main
main
1m 17s
fix: warn instead of silently dropping multi-element charging tags CI #192: Pull request #97 opened by jayhesselberth
1m 6s fix/charging-table-multielement-warn
fix/charging-table-multielement-warn
1m 6s
Fix: retain ML=0 reads in get_charging_table.py (#96) CI #191: Commit 16ae5f6 pushed by jayhesselberth
1m 6s main
main
1m 6s
chore: pixi update (snakefmt 2.0.1, snakemake 9.22.0) and reformat CI #189: Commit e3f543e pushed by jayhesselberth
1m 25s main
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1m 25s
fix: auto-init leech submodule in pixi setup CI #188: Commit a1d5e49 pushed by jayhesselberth
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refactor: nest aa_identity config and disable modkit/odds_ratios outputs CI #187: Commit 2b57945 pushed by jayhesselberth
1m 7s main
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Revert "fix: use squeue for job status and improve logging" CI #186: Commit 46d969c pushed by jmbilodeaux
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fix: use squeue for job status and improve logging CI #185: Commit 3170ae9 pushed by jmbilodeaux
43s main
main
43s
fix: use absolute paths in squiggy-session.json CI #184: Commit 0d928d6 pushed by jayhesselberth
37s main
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37s
fix: suppress CDPATH output in setup scripts CI #183: Pull request #94 opened by lkwhite
38s fix/cdpath-setup-scripts
fix/cdpath-setup-scripts
38s
perf: optimize classify_aa throughput (16 CPUs, vmtouch, queue pipeline) CI #182: Commit c887266 pushed by jayhesselberth
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fix: pin snakemake >=9.17 for duration string parsing, revert classif… CI #181: Commit 97cf60a pushed by jayhesselberth
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chore: update leech submodule to v0.3.1, use --recursive for escapepo… CI #180: Commit 8c55cc2 pushed by jayhesselberth
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fix: match classify_aa rule to installed leech CLI (--reference-ancho… CI #179: Commit e44a733 pushed by jayhesselberth
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fix: move install-leech to standalone script for pixi shell compatibi… CI #178: Commit 6ee989b pushed by jayhesselberth
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fix: upgrade snakemake to 9.17, fix SLURM profile, build leech-core i… CI #177: Commit 2923e16 pushed by jayhesselberth
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fix: quote SLURM string resources and remove duplicate install-leech CI #176: Commit 5f6aacd pushed by jayhesselberth
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feat: deduplicate identical sequences in build_trna_reference CI #175: Commit d3a42b1 pushed by jayhesselberth
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fix: correct SLURM account/partition pairing and add aa_identity rule CI #174: Commit 40c3119 pushed by jayhesselberth
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fix: correct motif_offset from 3 to 2 in classify_charging_leech rule CI #173: Commit dd4fcfa pushed by jayhesselberth
1m 19s main
main
1m 19s
feat: embed reference M5 checksums in BAM headers CI #172: Pull request #93 opened by jayhesselberth
1m 57s feat/bam-header-m5-checksums
feat/bam-header-m5-checksums
1m 57s
fix: update tests for lowercase tags and run snakefmt CI #171: Commit ab31b1e pushed by jayhesselberth
1m 16s main
main
1m 16s