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Commits on Feb 4, 2026

• Refactor RE site lookup and fix boundary checks

  sahlenlab

  committed
  a2e2da8

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Commits on Apr 25, 2022

• Revert "Clean up and fix bugs"

  aanil

  authored
  6c52acc

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Commits on Apr 11, 2022

• Remove unintended comment

  aanil

  committed
  5968290

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• Merge branch 'master' of https://github.com/aanil/HiCapTools

  aanil

  committed
  ce38ce1

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• Fix bug

  aanil

  committed
  92458eb

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Commits on Oct 29, 2021

• Cleanup unused code

  aanil

  authored
  2178392

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Commits on Jul 6, 2018

• Bug fix:Empty bin addition in BackgroundFrequency

  aanil

  committed
  9c55c95

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Commits on Jun 20, 2018

• Updated allowed threshold between two negative control probes

  

  a_anil

  committed
  db792d2

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Commits on Mar 22, 2018

• Added Strand Combination in ProximityDetector output and minor bug fixes

  

  a_anil

  committed
  9ba8577

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Commits on Oct 31, 2017

• Feature padding fix

  

  a_anil

  committed
  a9b3448

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Commits on Oct 17, 2017

• Update input options and ComputeStats

  

  a_anil

  committed
  88f9bd9

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Commits on Sep 29, 2017

• Remove WashU file generation from ProximityDetector

  

  a_anil

  committed
  6da6467

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Commits on Sep 22, 2017

• Fix spacing in output files

  

  a_anil

  committed
  47f688d

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Commits on Sep 18, 2017

• Fix spacing in output files

  

  a_anil

  committed
  7ced0a1

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Commits on Sep 8, 2017

• Update output spacing

  

  a_anil

  committed
  2413dbe

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Commits on Sep 1, 2017

• Update log messages

  

  a_anil

  committed
  1c02725

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Commits on Aug 28, 2017

• Update NegativeControl Probe generation

  

  a_anil

  committed
  e7bc26d

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Commits on Aug 22, 2017

• Update Transcript List file format and configurable parameters

  

  a_anil

  committed
  86d7a2a

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Commits on Aug 21, 2017

• Update Transcript List file format and configurable parameters

  

  a_anil

  committed
  9ccc1e4

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Commits on Aug 7, 2017

• Update probe priority check

  

  a_anil

  committed
  b3e98a5

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Commits on Jul 31, 2017

• Streamline Repeat Checking

  

  a_anil

  committed
  1e32cce

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• Streamline Repeat Checking

  

  a_anil

  committed
  5e41e44

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Commits on Jul 28, 2017

• Update permissions

  

  a_anil

  committed
  d4e6697

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• Update CallHiCUP

  

  a_anil

  committed
  528f2e5

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• Update ProbeDesigner Call and various

  

  a_anil

  committed
  2dc7a0f

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Commits on Jun 21, 2017

• Revision edits various

  

  a_anil

  committed
  86de3ad

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Commits on May 15, 2017

• Updated overlap tree check

  

  a_anil

  committed
  89b459e

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Commits on May 11, 2017

• Updated ProcessPairCount

  

  a_anil

  committed
  59964ef

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Commits on May 10, 2017

• Updated error messages and negative control probe display order

  

  a_anil

  committed
  6a749ca

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Commits on May 8, 2017

• Updated Error Message in coordinate checking

  

  a_anil

  committed
  b6ff55e

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Commits on Apr 11, 2017

• Bug Fix Find_Interactions

  

  a_anil

  committed
  ced5189

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Commits on Mar 30, 2017

• Added probe sequence output and optional config file input

  

  a_anil

  committed
  602b442

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Commits on Mar 28, 2017

• ProbeID and ProbeFileMerge Update

  

  a_anil

  committed
  e4b0602

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Commits on Mar 24, 2017

• ProbeID and ProbeFileMerge Update

  

  a_anil

  committed
  27f97d5

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Commits on Mar 16, 2017

• Initial Update

  

  a_anil

  committed
  bbbcd07

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