[MRG] Fix segfault in AgglomerativeClustering with read-only mmaps #12485
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amueller
approved these changes
Oct 30, 2018
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Non-regression test? Common test? |
The failing test in #12483 is already a common test, and passes for other estimators but segfaults for this one with a given version of gcc in a particular environment. As I mentioned in #12483 (comment) the segfault is deterministic, but I was not able to reproduce it on passing that specific array to |
jnothman
approved these changes
Oct 31, 2018
I'm not convinced it does. The segfault only happens in very peculiar environement (gcc version, but it doesn't segfault on other systems with the same gcc versions) that we are not able to exactly determine, and only happens for read-only arrays and I have a hard time believing that it would affect users in practice. There is no reason to use |
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think we don't need a whatsnew. |
thoo
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Nov 7, 2018
* upstream/master: joblib 0.13.0 (scikit-learn#12531) DOC tweak KMeans regarding cluster_centers_ convergence (scikit-learn#12537) DOC (0.21) Make sure plot_tree docs are generated and fix link in whatsnew (scikit-learn#12533) ALL Add HashingVectorizer to __all__ (scikit-learn#12534) BLD we should ensure continued support for joblib 0.11 (scikit-learn#12350) fix typo in whatsnew Fix dead link to numpydoc (scikit-learn#12532) [MRG] Fix segfault in AgglomerativeClustering with read-only mmaps (scikit-learn#12485) MNT (0.21) OPTiCS change the default `algorithm` to `auto` (scikit-learn#12529) FIX SkLearn `.score()` method generating error with Dask DataFrames (scikit-learn#12462) MNT KBinsDiscretizer.transform should not mutate _encoder (scikit-learn#12514)
thoo
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Nov 9, 2018
…ybutton * upstream/master: FIX YeoJohnson transform lambda bounds (scikit-learn#12522) [MRG] Additional Warnings in case OpenML auto-detected a problem with dataset (scikit-learn#12541) ENH Prefer threads for IsolationForest (scikit-learn#12543) joblib 0.13.0 (scikit-learn#12531) DOC tweak KMeans regarding cluster_centers_ convergence (scikit-learn#12537) DOC (0.21) Make sure plot_tree docs are generated and fix link in whatsnew (scikit-learn#12533) ALL Add HashingVectorizer to __all__ (scikit-learn#12534) BLD we should ensure continued support for joblib 0.11 (scikit-learn#12350) fix typo in whatsnew Fix dead link to numpydoc (scikit-learn#12532) [MRG] Fix segfault in AgglomerativeClustering with read-only mmaps (scikit-learn#12485) MNT (0.21) OPTiCS change the default `algorithm` to `auto` (scikit-learn#12529) FIX SkLearn `.score()` method generating error with Dask DataFrames (scikit-learn#12462) MNT KBinsDiscretizer.transform should not mutate _encoder (scikit-learn#12514)
thoo
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Nov 14, 2018
…cikit-learn#12485) This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside `ward_tree` when calling `scipy.cluster.hierarchy.ward`. Closes scikit-learn#12483 (see the above issue for more details)
thoo
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Nov 14, 2018
…cikit-learn#12485) This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside `ward_tree` when calling `scipy.cluster.hierarchy.ward`. Closes scikit-learn#12483 (see the above issue for more details)
jnothman
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Nov 14, 2018
…cikit-learn#12485) This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside `ward_tree` when calling `scipy.cluster.hierarchy.ward`. Closes scikit-learn#12483 (see the above issue for more details)
jnothman
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Nov 14, 2018
…cikit-learn#12485) This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside `ward_tree` when calling `scipy.cluster.hierarchy.ward`. Closes scikit-learn#12483 (see the above issue for more details)
xhluca
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Apr 28, 2019
…cikit-learn#12485) This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside `ward_tree` when calling `scipy.cluster.hierarchy.ward`. Closes scikit-learn#12483 (see the above issue for more details)
xhluca
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Apr 28, 2019
…mmaps (scikit-learn#12485)" This reverts commit 940eb67.
xhluca
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Apr 28, 2019
…mmaps (scikit-learn#12485)" This reverts commit 940eb67.
koenvandevelde
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Jul 12, 2019
…cikit-learn#12485) This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside `ward_tree` when calling `scipy.cluster.hierarchy.ward`. Closes scikit-learn#12483 (see the above issue for more details)
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This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside
ward_treewhen callingscipy.cluster.hierarchy.ward.Closes #12483
(see the above issue for more details)