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DOC remove example OLS with 3D plot #29967
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Original file line number | Diff line number | Diff line change |
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""" | ||
========================================================= | ||
Linear Regression Example | ||
========================================================= | ||
The example below uses only the first feature of the `diabetes` dataset, | ||
in order to illustrate the data points within the two-dimensional plot. | ||
The straight line can be seen in the plot, showing how linear regression | ||
attempts to draw a straight line that will best minimize the | ||
residual sum of squares between the observed responses in the dataset, | ||
and the responses predicted by the linear approximation. | ||
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||
The coefficients, residual sum of squares and the coefficient of | ||
determination are also calculated. | ||
============================== | ||
Ordinary Least Squares Example | ||
============================== | ||
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This example shows how to use the ordinary least squares (OLS) model | ||
called :class:`~sklearn.linear_model.LinearRegression` in scikit-learn. | ||
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For this purpose, we use a single feature from the diabetes dataset and try to | ||
predict the diabetes progression using this linear model. We therefore load the | ||
diabetes dataset and split it into training and test sets. | ||
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Then, we fit the model on the training set and evaluate its performance on the test | ||
set and finally visualize the results on the test set. | ||
""" | ||
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# Authors: The scikit-learn developers | ||
# SPDX-License-Identifier: BSD-3-Clause | ||
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import matplotlib.pyplot as plt | ||
import numpy as np | ||
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from sklearn import datasets, linear_model | ||
# %% | ||
# Data Loading and Preparation | ||
# ---------------------------- | ||
# | ||
# Load the diabetes dataset. For simplicity, we only keep a single feature in the data. | ||
# Then, we split the data and target into training and test sets. | ||
from sklearn.datasets import load_diabetes | ||
from sklearn.model_selection import train_test_split | ||
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X, y = load_diabetes(return_X_y=True) | ||
X = X[:, [2]] # Use only one feature | ||
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=20, shuffle=False) | ||
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# %% | ||
# Linear regression model | ||
# ----------------------- | ||
# | ||
# We create a linear regression model and fit it on the training data. Note that by | ||
# default, an intercept is added to the model. We can control this behavior by setting | ||
# the `fit_intercept` parameter. | ||
from sklearn.linear_model import LinearRegression | ||
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regressor = LinearRegression().fit(X_train, y_train) | ||
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# %% | ||
# Model evaluation | ||
# ---------------- | ||
# | ||
# We evaluate the model's performance on the test set using the mean squared error | ||
# and the coefficient of determination. | ||
from sklearn.metrics import mean_squared_error, r2_score | ||
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# Load the diabetes dataset | ||
diabetes_X, diabetes_y = datasets.load_diabetes(return_X_y=True) | ||
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# Use only one feature | ||
diabetes_X = diabetes_X[:, np.newaxis, 2] | ||
y_pred = regressor.predict(X_test) | ||
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# Split the data into training/testing sets | ||
diabetes_X_train = diabetes_X[:-20] | ||
diabetes_X_test = diabetes_X[-20:] | ||
print(f"Mean squared error: {mean_squared_error(y_test, y_pred):.2f}") | ||
print(f"Coefficient of determination: {r2_score(y_test, y_pred):.2f}") | ||
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# Split the targets into training/testing sets | ||
diabetes_y_train = diabetes_y[:-20] | ||
diabetes_y_test = diabetes_y[-20:] | ||
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# Create linear regression object | ||
regr = linear_model.LinearRegression() | ||
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# Train the model using the training sets | ||
regr.fit(diabetes_X_train, diabetes_y_train) | ||
# %% | ||
# Plotting the results | ||
# -------------------- | ||
# | ||
# Finally, we visualize the results on the train and test data. | ||
import matplotlib.pyplot as plt | ||
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# Make predictions using the testing set | ||
diabetes_y_pred = regr.predict(diabetes_X_test) | ||
fig, ax = plt.subplots(ncols=2, figsize=(10, 5), sharex=True, sharey=True) | ||
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# The coefficients | ||
print("Coefficients: \n", regr.coef_) | ||
# The mean squared error | ||
print("Mean squared error: %.2f" % mean_squared_error(diabetes_y_test, diabetes_y_pred)) | ||
# The coefficient of determination: 1 is perfect prediction | ||
print("Coefficient of determination: %.2f" % r2_score(diabetes_y_test, diabetes_y_pred)) | ||
ax[0].scatter(X_train, y_train, label="Train data points") | ||
ax[0].plot( | ||
X_train, | ||
regressor.predict(X_train), | ||
linewidth=3, | ||
color="tab:orange", | ||
label="Model predictions", | ||
) | ||
ax[0].set(xlabel="Feature", ylabel="Target", title="Train set") | ||
ax[0].legend() | ||
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# Plot outputs | ||
plt.scatter(diabetes_X_test, diabetes_y_test, color="black") | ||
plt.plot(diabetes_X_test, diabetes_y_pred, color="blue", linewidth=3) | ||
ax[1].scatter(X_test, y_test, label="Test data points") | ||
ax[1].plot(X_test, y_pred, linewidth=3, color="tab:orange", label="Model predictions") | ||
ax[1].set(xlabel="Feature", ylabel="Target", title="Test set") | ||
ax[1].legend() | ||
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plt.xticks(()) | ||
plt.yticks(()) | ||
fig.suptitle("Linear Regression") | ||
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plt.show() | ||
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# %% | ||
# Conclusion | ||
# ---------- | ||
# | ||
# The trained model corresponds to the estimator that minimizes the mean squared error | ||
# between the predicted and the true target values on the training data. We therefore | ||
# obtain an estimator of the conditional mean of the target given the data. | ||
# | ||
# Note that in higher dimensions, minimizing only the squared error might lead to | ||
# overfitting. Therefore, regularization techniques are commonly used to prevent this | ||
# issue, such as those implemented in :class:`~sklearn.linear_model.Ridge` or | ||
# :class:`~sklearn.linear_model.Lasso`. |
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