Description
These are tutorials I have generated for my lab. I recommend reading the markdowns in the .ipynb for more information about specific tutorials.
./bedtools_tutorial/
A quick tutorial on .bed files, how to perform basic bedtools intersections, shuffle genome elements, and estimate genome coverage
./config_ini_tutorial/
How to set up and use a config.ini file to keep track of file names, paths, and other variables using python configparser.
./Bash_w_jupyter.ipynb
How to use bash with Jupyter Notebooks
./Jupyter_notebook_ACCRE_tutorial.ipynb
How to run Jupyter notebooks on Vanderbilt's high performance compute cluster, ACCRE