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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1k 232

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 466 109

3. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 393 50

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 381 63

5. scib scib Public

   Benchmarking analysis of data integration tools

   Python 380 70

6. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 307 36