clinical-research

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

A Deep Learning Python Toolkit for Healthcare Applications.

Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.

Agent Skills for medical research — literature search, reporting-guideline & citation checks, statistics, publication figures, submission. Works with Claude Code, Codex, Cursor & GitHub Copilot. Built by a physician-researcher, tested on real publications. MIT.

Create "Table 1" for research papers in Python

benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

📰 High-performance tool for negation and uncertainty detection in radiology reports

Claude Code-powered end-to-end meta-analysis automation: AI-assisted literature review, screening, extraction, analysis, and manuscript generation for systematic reviews and clinical evidence synthesis

A Slicer extension to provide a GUI around pyradiomics

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

A toolkit for evaluating and monitoring AI models in clinical settings

Toolbox for biostatistics and clinical data analysis in R. Developed by the biostatistics team at Laboratorios Sophia S.A. de C.V.

⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline

Phoenix CTMS - the ultimative CTMS/PRS/CDMS.

Unofficial OpenEvidence MCP server — query OpenEvidence from Claude Code, Codex, and any MCP client through your own logged-in browser tab (no API key). Fire-and-forget asks, a shared relay daemon for concurrent sessions, BibTeX + Crossref citations.

239 evaluated academic Claude/agent skills across 17 research domains (bioinformatics, data science, clinical, social-science methods, Turkish academia & more). Executable eval per skill, deterministic citation verifier, research→write→review→publish pipeline, and a skill-finder front door. Claude Code, Cursor, Codex, Gemini CLI & Copilot.

Aggregate and analyse clinical trials data from public registers

Automated systematic literature review pipeline generating publication-ready manuscripts from Scopus/PubMed/Embase with PRISMA compliance, GRADE evidence synthesis, and DOI validation for clinical research.

this master thesis project is based on OpenAI Whisper with the goal to transcibe interviews

Give your AI agents clinical database access, research automation, and clinician-reviewed domain knowledge for MIMIC-IV, eICU, and more.