Scripts to download genomes from the NCBI FTP servers

Scripts to download genomes from the NCBI FTP servers

A Go package for engineering organisms.

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

A genome visualization python package for comparative genomics

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

VAPiD: Viral Annotation and Identification Pipeline

VAPiD: Viral Annotation and Identification Pipeline

Nextstrain build for mpox virus

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories