Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation
đźš‚ Python API for Emma's Markov Model Algorithms đźš‚
Tools for estimating and analyzing Markov state models
Modeling molecular ensembles with scalable data structures and parallel computing
Cryptic pocket prediction using AlphaFold 2
[Deprecated] py2.7 API.Cultor: Another BigData approach to sound collections
Python package for generating Markov state models
PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis
mdml: Deep Learning for Molecular Simulations
Hands-on tutorials for Markov state modeling of MD and EXP data
Data, methods and code for research on the molecular dynamics of HIV glycoprotein gp120
Predicting kinetics of aromatic side-chain flipping using Markov State Model
Scripts used for MSM and post-dynamics analysis of PMV simulations
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